Contig 006158:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002B19Sequence578004795 (4)emb|CDP07060.1|5e-92unnamed protein product [Coffea canephora]714006158 (3)ref|XP_006340221.1|2e-94PREDICTED: cell division cycle protein 48 homolog [Solanum tuberosum]
JMFN037C01Sequence393006158 (3)ref|XP_010241832.1|2e-11PREDICTED: cell division cycle protein 48 homolog [Nelumbo nucifera]
JMFS151F09Sequence633006158 (3)ref|XP_006340221.1|2e-73PREDICTED: cell division cycle protein 48 homolog [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF002B19+ GTCCCGGTCGTCTTGAC
                      ____________________________________________________________
consensus GTCCCGGTCGTCTTGAC
 
. : . : . : . : . : . :
JMFS151F09- CAATTAATATATATCCCTCTTCCAGATGAAGATTCTCGGCATCAGATCTTCAAAGCTTGC
rJMFF002B19+ CAATTAATATATATCCCTCTTCCAGATGAAGATTCTCGGCATCAGATCTTCAAAGCTTGC
                      ____________________________________________________________
consensus CAATTAATATATATCCCTCTTCCAGATGAAGATTCTCGGCATCAGATCTTCAAAGCTTGC
 
. : . : . : . : . : . :
JMFS151F09- CTGAGAAAATCTCCAGTTTCCAAAGATGTTGATATAAGAGCTCTTGCGAAATACACTCAT
rJMFF002B19+ CTGAGAAAATCTCCAGTTTCCAAAGATGTTGATATAAGAGCTCTTGCGAAATACACTCAT
                      ____________________________________________________________
consensus CTGAGAAAATCTCCAGTTTCCAAAGATGTTGATATAAGAGCTCTTGCGAAATACACTCAT
 
. : . : . : . : . : . :
JMFS151F09- GGATTTAGTGGAGCAGATATCACAGAGATCTGCCAGAGGGCATGCAAATACGCCATACGG
rJMFF002B19+ GGATTTAGTGGAGCAGATATCACAGAGATCTGCCAGAGGGCATGCAAATACGCCATACGG
                      ____________________________________________________________
consensus GGATTTAGTGGAGCAGATATCACAGAGATCTGCCAGAGGGCATGCAAATACGCCATACGG
 
. : . : . : . : . : . :
JMFS151F09- GAGAACAT--AGAAAGATATCGAAAGGGAGAAGCAGAGGAGGGAGAATCCCGATTCCATG
rJMFF002B19+ GAGAACATAGAGAAAGATATCGAAAGGGAGAAGCAGAGGAGGGAGAATCCCGATTCCATG
                      ____________________________________________________________
consensus GAGAACATAGAGAAAGATATCGAAAGGGAGAAGCAGAGGAGGGAGAATCCCGATTCCATG
 
. : . : . : . : . : . :
JMFS151F09- GACGAGGATGATGCTGGGGATGAAGTTTCAGAGATTAAACCTGCGCATTTTGAGGAATCC
rJMFF002B19+ GACGAGGATGATGCTGGGGATGAAGTTTCAGAGATTAAACCTGCGCATTTTGAGGAATCC
                      ____________________________________________________________
consensus GACGAGGATGATGCTGGGGATGAAGTTTCAGAGATTAAACCTGCGCATTTTGAGGAATCC
 
. : . : . : . : . : . :
JMFS151F09- ATGAAGTATGCTCGTCGGAGTGTGAGTGATGCCGATATACGCAAATACCAATCCTTTGCT
rJMFF002B19+ ATGAAGTATGCTCGTCGGAGTGTGAGTGATGCCGATATACGCAAATACCAATCCTTTGCT
JMFN037C01+ GATGCCGATATACGCAAATACCAATCCTTTGCT
                      ____________________________________________________________
consensus ATGAAGTATGCTCGTCGGAGTGTGAGTGATGCCGATATACGCAAATACCAATCCTTTGCT
 
. : . : . : . : . : . :
JMFS151F09- CAAACACTGCAACAATCTCGCGGTTTTGGAACTGAATTCCGCTTTGCTGAGTCAGGAACT
rJMFF002B19+ CAAACACTGCAACAATCTCGCGGTTTTGGAACTGAATTCCGCTTTGCTGAGTCAGGAACT
JMFN037C01+ CAAACACTGCAACAATCTCGCGGTTTTGGAACTGAATTCCGCTTTGCTGAGTCAGGAACT
                      ____________________________________________________________
consensus CAAACACTGCAACAATCTCGCGGTTTTGGAACTGAATTCCGCTTTGCTGAGTCAGGAACT
 
. : . : . : . : . : . :
JMFS151F09- GGCGGGGCCTCTGGAGCCGACCCATTTGCAACCTCTACTGCAGCAGCTGATGAAGACGAC
rJMFF002B19+ GGCGGGGCCTCTGGAGCCGACCCATTTGCAACCTCTACTGCAGCAGNTGATGAAGACGAC
JMFN037C01+ GGCGGGGCCTCTGGAGCCGACCCATTTGCAACCTTTACTGCAGCAGCTGATGAAGACGAC
                      ____________________________________________________________
consensus GGCGGGGCCTCTGGAGCCGACCCATTTGCAACCTCTACTGCAGCAGCTGATGAAGACGAC
 
. : . : . : . : . : . :
JMFS151F09- TTGTATAGCTAAG
rJMFF002B19+ TTGTATAGCTAAGTTTTAGATATATATATATATATGCCCTTTAGTATTAATTATTAGTGT
JMFN037C01+ TTGTATAGCTAAGTTTTAGATATATATATATATATGCCCTTTAGTATTAATTATTAGTGT
                      ____________________________________________________________
consensus TTGTATAGCTAAGTTTTAGATATATATATATATATGCCCTTTAGTATTAATTATTAGTGT
 
. : . : . : . : . : . :
rJMFF002B19+ TTAGGCTACTTTTTTTTGGGTTCCGTTCAGATATTTTTACTCTTGCACTGCAATTCCCTT
JMFN037C01+ TTAGGCTACTTTTTTTTGGGTTCCGTTCAGATATTTTTACTCTTGCACTGCAATTCCCTT
                      ____________________________________________________________
consensus TTAGGCTACTTTTTTTTGGGTTCCGTTCAGATATTTTTACTCTTGCACTGCAATTCCCTT
 
. : . : . : . : . : . :
rJMFF002B19+ TTCTTGATATCTGGATTAAATATTTATATATGGTAGACGTCAGATAATCTCATATCTTAC
JMFN037C01+ TTCTTGATATCTGGATTAAATATTTATATATGGTAGACGTCAGATAATCTCATATCTTAC
                      ____________________________________________________________
consensus TTCTTGATATCTGGATTAAATATTTATATATGGTAGACGTCAGATAATCTCATATCTTAC
 
. : . : . : . : . : . :
rJMFF002B19+ GCACTCCATACTA
JMFN037C01+ GCACTCCATACTACCXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAGACTAGTTCTCTCTC
                      ____________________________________________________________
consensus GCACTCCATACTACCNNNNNNNNNNNNNNNNNNNNNNNNNNCTGAGACTAGTTCTCTCTC