Contig 006147:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN028M02Sequence549006147 (2)gb|ABK93854.1|3e-82unknown [Populus trichocarpa]
JMFS025D11Sequence462006147 (2)ref|XP_011021880.1|2e-19PREDICTED: kinesin-like protein KCA2 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS025D11+ AGATCAACTCAGAGCATATCTTAGAATAATATTTAGAG
                      ____________________________________________________________
consensus AGATCAACTCAGAGCATATCTTAGAATAATATTTAGAG
 
. : . : . : . : . : . :
JMFS025D11+ AGCAATGGAGTTTTACAAGAGCAGTATTGCCAGTATTATATACATAACAACATGCTACAT
                      ____________________________________________________________
consensus AGCAATGGAGTTTTACAAGAGCAGTATTGCCAGTATTATATACATAACAACATGCTACAT
 
. : . : . : . : . : . :
JMFS025D11+ AACGTACCAAAACTGGAAATTGGTCACAAGGGCAACGACTGTAACCAAGATTACATTAAA
                      ____________________________________________________________
consensus AACGTACCAAAACTGGAAATTGGTCACAAGGGCAACGACTGTAACCAAGATTACATTAAA
 
. : . : . : . : . : . :
JMFS025D11+ CCCCCCAGAGGTTACTTATCAATGTCCCAAACAAATAATGGCACAAGACGTGCAACATGG
JMFN028M02+ GCAACATGG
                      ____________________________________________________________
consensus CCCCCCAGAGGTTACTTATCAATGTCCCAAACAAATAATGGCACAAGACGTGCAACATGG
 
. : . : . : . : . : . :
JMFS025D11+ CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
JMFN028M02+ CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
                      ____________________________________________________________
consensus CAGATCTTCAAAGTTATACACACAAGCCGTGGAATTTAACAATACAAGGTGGTCAAACGC
 
. : . : . : . : . : . :
JMFS025D11+ ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
JMFN028M02+ ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
                      ____________________________________________________________
consensus ACCTTATCGTTTCGTTTGCTCTTCAATACTTGCACTTACGATTTCATGTCCTTCAGCACT
 
. : . : . : . : . : . :
JMFS025D11+ CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
JMFN028M02+ CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
                      ____________________________________________________________
consensus CCACCCTTCTCTAGCTCACTTATGAGGTCCCTCAATGCTGGAACCTTCATAGCAAGTGTC
 
. : . : . : . : . : . :
JMFS025D11+ CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
JMFN028M02+ CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
                      ____________________________________________________________
consensus CTGTATAATCTAGAATACCTAGCTCGGGTTCCATCTGCTGTCCGAGCAAGTGCGAGAAGG
 
. : . : . : . : . : . :
JMFS025D11+ CTTA
JMFN028M02+ CTTAGGGCCTCGGGAAGCTGTGTGAATAACTGCTTCATCTCCTCCAAGCTCATATTTTCA
                      ____________________________________________________________
consensus CTTAGGGCCTCGGGAAGCTGTGTGAATAACTGCTTCATCTCCTCCAAGCTCATATTTTCA
 
. : . : . : . : . : . :
JMFN028M02+ AGAACAGTTGGTCTTGGAACAACTCTAACAATCTCACCCCCTTTGGGTTCTTGAACTCGG
                      ____________________________________________________________
consensus AGAACAGTTGGTCTTGGAACAACTCTAACAATCTCACCCCCTTTGGGTTCTTGAACTCGG
 
. : . : . : . : . : . :
JMFN028M02+ GCATCAGCTTTGATGACCAGTTCAGAATTTGAGTTAGCTCCACATTTGATAATAAAAGGG
                      ____________________________________________________________
consensus GCATCAGCTTTGATGACCAGTTCAGAATTTGAGTTAGCTCCACATTTGATAATAAAAGGG
 
. : . : . : . : . : . :
JMFN028M02+ GATGTTGAACCTGTGTTGAACTGTAGAACATTCCATTGCGCCACATCAGTTTCACCACCT
                      ____________________________________________________________
consensus GATGTTGAACCTGTGTTGAACTGTAGAACATTCCATTGCGCCACATCAGTTTCACCACCT
 
. : . : . : . : . : . :
JMFN028M02+ GACCCCGCCGCATCTGCACTGTTCAGGGAAGCATTTACAGTGTCATGAAGCCGGTCATCT
                      ____________________________________________________________
consensus GACCCCGCCGCATCTGCACTGTTCAGGGAAGCATTTACAGTGTCATGAAGCCGGTCATCT