Contig 006139:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN015G06Sequence624006139 (2)ref|XP_009797561.1|5e-100PREDICTED: ubiquitin-conjugating enzyme E2 10-like [Nicotiana sylvestris]
JMSF027L02Sequence686010739 (5)ref|XP_006363611.1|9e-60PREDICTED: F-box/LRR-repeat protein 3-like [Solanum tuberosum]694006139 (2)emb|CDP01866.1|4e-72unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027L02+ GATCCAGAAATCACACAAAC
                      ____________________________________________________________
consensus GATCCAGAAATCACACAAAC
 
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rJMSF027L02+ ATCTATATATCCTTCACCACAAAAATTGTTTGTTTTTAATTTTTTGTAATTTTTGGTAGT
                      ____________________________________________________________
consensus ATCTATATATCCTTCACCACAAAAATTGTTTGTTTTTAATTTTTTGTAATTTTTGGTAGT
 
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rJMSF027L02+ CTCTCAGCTTAGCACACACACCAGCTGGAATAATGGCTTCCAGGAGGATTCTCAAGGAGC
JMFN015G06- CTTCCAGGAGGATTCTCAAGGAGC
                      ____________________________________________________________
consensus CTCTCAGCTTAGCACACACACCAGCTGGAATAATGGCTTCCAGGAGGATTCTCAAGGAGC
 
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rJMSF027L02+ TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
JMFN015G06- TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
                      ____________________________________________________________
consensus TTAGAGATCTGCAAAGAGACCCTCCTACATCATGCAGTGCAGGACCAGTGGCTCAAGATA
 
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rJMSF027L02+ TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
JMFN015G06- TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
                      ____________________________________________________________
consensus TGTTTCATTGGCAAGCAACCATTATTGGTCCAAATGACAGTCCCTATTCTGGTGGTGTTT
 
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rJMSF027L02+ TCCAAGTCACCATTCATTTCCCCCCTGATTA-CCCTTCAAACCTCCCAAGGTTGCCTTTA
JMFN015G06- TCCAAGTCACCATTCATTTCCCCCCTGATTACCCCTTCAAACCTCCCAAGGTTGCCTTTA
                      ____________________________________________________________
consensus TCCAAGTCACCATTCATTTCCCCCCTGATTACCCCTTCAAACCTCCCAAGGTTGCCTTTA
 
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rJMSF027L02+ GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
JMFN015G06- GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
                      ____________________________________________________________
consensus GGACCAAAGTTTTTCATCCAAATATAAACAATAATGGAAACATCTGCTTGGATATCCTAA
 
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rJMSF027L02+ AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
JMFN015G06- AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
                      ____________________________________________________________
consensus AGGATCAATGGAGCCCAGCACTCACCATATCAAAGGTTTTGCTTTCAATATGTTCACTGC
 
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rJMSF027L02+ TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
JMFN015G06- TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
                      ____________________________________________________________
consensus TAACAGATCCAAATCCAGATGATCCATTGGTTCCAGAAATAGCTCACATGTACAAGACTG
 
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rJMSF027L02+ ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
JMFN015G06- ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
                      ____________________________________________________________
consensus ACAGATCCAAGTATGAAACCATGGCTCGTAGCTGGACTCAAAAGTACGCCATGAATTGAT
 
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rJMSF027L02+ CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
JMFN015G06- CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
                      ____________________________________________________________
consensus CTATCTGAGTATCATCCTAAGCAGATTAAGAAAAACGAGAGAATCAATCTCAAACATGTT
 
. : . : . : . : . : . :
rJMSF027L02+ AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
JMFN015G06- AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
                      ____________________________________________________________
consensus AAGTAGAAATTGGTTCTTAATTTTCATGGTTTGTGTCGTCGAATAATGACTTGTGGATGA
 
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rJMSF027L02+ GTCAAC
JMFN015G06- GTCAACACCTGAATCACTGGACAATTCTACTACTACTATTAGTGTAATACATATTTTTTC
                      ____________________________________________________________
consensus GTCAACACCTGAATCACTGGACAATTCTACTACTACTATTAGTGTAATACATATTTTTTC