Contig 006127:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN008A19Sequence616006127 (2)ref|XP_007212303.1|3e-38hypothetical protein PRUPE_ppa014035mg [Prunus persica] ref|XP_008245369.1| PRED
JMSF036P19Sequence345015809570006127 (2)ref|XP_011082718.1|2e-35PREDICTED: transcription elongation factor 1 homolog [Sesamum indicum] ref|XP_0

Alignment

This contig is upended


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rJMSF036P19+                                 GTCGCCGCTGTACTTGTGGGCGGAGACGAGGCCCGTA
JMFN008A19-                                                      CGGAGACGAGGCCCGTA
                      ____________________________________________________________
consensus                                    GTCGCCGCTGTACTTGTGGGCGGAGACGAGGCCCGTA
 
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rJMSF036P19+          TAAAATTGACTTCGTTCATCTCTCTCGATTNGCTCTTTCNTCTCTGCGAGATCTTCGTTT
JMFN008A19-           TAAAATTGACTTCGTTCATCTCTCTCGATTTGCTCTTTCATCTCTGCGAGATCTTCGTTT
                      ____________________________________________________________
consensus             TAAAATTGACTTCGTTCATCTCTCTCGATTTGCTCTTTCATCTCTGCGAGATCTTCGTTT
 
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rJMSF036P19+          TGAATTGAAAGAGAGCAAGAATANGAGTTAAATTGGAGTATGGGTAAGAGGAAGTCAAAG
JMFN008A19-           TGAATTGAAAGAGAGCAAGAATAAGAGTTAAATTGGAGTATGGGTAAGAGGAAGTCAAAG
                      ____________________________________________________________
consensus             TGAATTGAAAGAGAGCAAGAATAAGAGTTAAATTGGAGTATGGGTAAGAGGAAGTCAAAG
 
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rJMSF036P19+          GCGAAGCCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTTTTCAGCTGTCCGTTN
JMFN008A19-           GCGAAGCCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTTTTCAGCTGTCCGTTC
                      ____________________________________________________________
consensus             GCGAAGCCACCTCCCAAGAAGAGAATGGACAAGCTTGATACTGTTTTCAGCTGTCCGTTC
 
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rJMSF036P19+          TGCAGTCATGGGACTAGTGTGGAATGCCGCANTGATATGAAGAACGCGATTGGTGAAGCA
JMFN008A19-           TGCAGTCATGGGACTAGTGTGGAATGCCGCATTGATATGAAGAACGCGATTGGTGAAGCA
                      ____________________________________________________________
consensus             TGCAGTCATGGGACTAGTGTGGAATGCCGCATTGATATGAAGAACGCGATTGGTGAAGCA
 
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rJMSF036P19+          GAATGCAATATTTGCAAAGAGAGCTATAGCACANCTGTGACAGCTTTGACAGAGCCTATC
JMFN008A19-           GAATGCAATATTTGCAAAGAGAGCTATAGCACAACTGTGACAGCTTTGACAGAGCCTATC
                      ____________________________________________________________
consensus             GAATGCAATATTTGCAAAGAGAGCTATAGCACAACTGTGACAGCTTTGACAGAGCCTATC
 
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rJMSF036P19+          GACATATATAGCGAATGGATTGATGAATGTGAGCGAGTTAACAACCCTGAAGATGANGGC
JMFN008A19-           GACATATATAGCGAATGGATTGATGAATGTGAGCGAGTTAACAACCCTGAAGATGATGGC
                      ____________________________________________________________
consensus             GACATATATAGCGAATGGATTGATGAATGTGAGCGAGTTAACAACCCTGAAGATGATGGC
 
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rJMSF036P19+          TAGGGTGTTTGATCTATATACAAACAAGGATAGGTTGTCTACTGNTCCAATGAACCTGTT
JMFN008A19-           TAGGGTGTTTGATCTATATACAAACAAGGATAGGTTGTCTACTGTTCCAATGAACCTGTT
                      ____________________________________________________________
consensus             TAGGGTGTTTGATCTATATACAAACAAGGATAGGTTGTCTACTGTTCCAATGAACCTGTT
 
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rJMSF036P19+          GATGGCCTGTTNTTGTAATGCTCTGCTTTCTTTACCCTAATCATAGTATATACNTATCCG
JMFN008A19-           GATGGCCTGTTGTTGTAATGCTCTGCTTTCTTTACCTTAA-CATAGTATATACATATCCG
                      ____________________________________________________________
consensus             GATGGCCTGTTGTTGTAATGCTCTGCTTTCTTTACCTTAATCATAGTATATACATATCCG
 
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rJMSF036P19+          CGATGAGTGCCTTCTATGTTGTATGTAACATGGTACATA                     
JMFN008A19-           CGATGAGTGCCTTCTATGTTGTATGTAACATGGTACATACATATGTTTATGCTTACACTG
                      ____________________________________________________________
consensus             CGATGAGTGCCTTCTATGTTGTATGTAACATGGTACATACATATGTTTATGCTTACACTG
 
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JMFN008A19-           CAAGATACCATTTGGTTGTTATATGAAATATAAAGATTTCTGTCTTGATAATTCATTCAA
                      ____________________________________________________________
consensus             CAAGATACCATTTGGTTGTTATATGAAATATAAAGATTTCTGTCTTGATAATTCATTCAA