Contig 006118:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005O18Sequence455006118 (3)ref|XP_004960824.1|88.6PREDICTED: uncharacterized protein LOC101759031 [Setaria italica]423006118 (3)ref|XP_004960824.1|88.6PREDICTED: uncharacterized protein LOC101759031 [Setaria italica]
JMFN004D19Sequence494006118 (3)ref|XP_004960824.1|88.6PREDICTED: uncharacterized protein LOC101759031 [Setaria italica]

Alignment

This contig is upended


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JMFF005O18+                                               TTTTTTTTTTCCAAAATTCACCAG
JMFN004D19+                                                         CCAAAATTCACCAG
                      ____________________________________________________________
consensus                                                 TTTTTTTTTTCCAAAATTCACCAG
 
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JMFF005O18+           TGCCATCATACCTGTGAACAGCCATCTTGTAACAATACTGTCATGCTGCATTATGCTTGC
rJMFF005O18-                  TACCTGTGAACAGCCATCTTGTAACAATACTGTCATGCTGCATTATGCTTGC
JMFN004D19+           TGCCATCATACCTGTGAACAGCCATCTTGTAACAATACTGTCATGCTGCATTATGCTTGC
                      ____________________________________________________________
consensus             TGCCATCATACCTGTGAACAGCCATCTTGTAACAATACTGTCATGCTGCATTATGCTTGC
 
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JMFF005O18+           TTATTACAAAAATAAATTTAAAAAAATGTCTCTCCAAGAAACCAGAATCCTAGGCACGTT
rJMFF005O18-          TTATTACAAAAATAAATTTAAAAAAATGTCTCTCCAAGAAACCAGAATCCTAGGCACGTT
JMFN004D19+           TTATTACAAAAATAAATTTAAAAAAATGTCTCTCCAAGAAACCAGAATCCTAGGCACGTT
                      ____________________________________________________________
consensus             TTATTACAAAAATAAATTTAAAAAAATGTCTCTCCAAGAAACCAGAATCCTAGGCACGTT
 
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JMFF005O18+           TTCCATCGCTTCACTTGCTCTCAACATCATATAGCTCTGATATCAAGTAAAGTCCATGAG
rJMFF005O18-          TTCCATCGCTTCACTTGCTCTCAACATCATATAGCTCTGATATCAAGTAAAGTCCATGAG
JMFN004D19+           TTCCATCGCTTCACTTGCTCTCAACATCATATAGCTCTGATATCAAGTAAAGTCCATGAG
                      ____________________________________________________________
consensus             TTCCATCGCTTCACTTGCTCTCAACATCATATAGCTCTGATATCAAGTAAAGTCCATGAG
 
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JMFF005O18+           CAAATGCACCGGCCAGAACGCCATAGAACAGCCGATCCCTCACAACCGGATTGTGTCGCA
rJMFF005O18-          CAAATGCACCGGCCAGAACGCCATAGAACAGCCGATCCCTCACAACCGGATTGTGTCGCA
JMFN004D19+           CAAATGCACCGGCCAGAACGCCATAGAACAGCCGATCCCTCACAACCGGATTGTGTCGCA
                      ____________________________________________________________
consensus             CAAATGCACCGGCCAGAACGCCATAGAACAGCCGATCCCTCACAACCGGATTGTGTCGCA
 
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JMFF005O18+           GTGAAATCCGAATCAGAGGAAGAACAGGAGCATAGACTAAAGGAAGCAGCATCATGAACG
rJMFF005O18-          GTGAAATCCGAATCAGAGGAAGAACAGGAGCATAGACTAAAGGAAGCAGCATCATGAACG
JMFN004D19+           GTGAAATCCGAATCAGAGGAAGAACAGGAGCATAGACTAAAGGAAGCAGCATCATGAACG
                      ____________________________________________________________
consensus             GTGAAATCCGAATCAGAGGAAGAACAGGAGCATAGACTAAAGGAAGCAGCATCATGAACG
 
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JMFF005O18+           GGGGTTGCTTTCGTGTCCTAAACATTTTCTGCTCATTGGGGATCTGGGGATCGGTCCGTG
rJMFF005O18-          GGGGTTGCTTTCGTGTCCTAAACATTTTCTGCTCATTGGGGATCTGGGGATCGGTCCGTG
JMFN004D19+           GGGGTTGCTTTCGTGTCCTAAACATTTTCTGCTCATTGGGGATCTGGGGATCGGTCCGTG
                      ____________________________________________________________
consensus             GGGGTTGCTTTCGTGTCCTAAACATTTTCTGCTCATTGGGGATCTGGGGATCGGTCCGTG
 
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JMFF005O18+           AAGCCATAGTCGCCGAGAACCAGAAATGGGGACGTCGAGTGACAGAAGAATTGAAAAAGT
rJMFF005O18-          AAGCCATAGTCGCCGAGAACCAGAAATGGGGACGTCGAGTGACAGAAGAATTGAAAAAGT
JMFN004D19+           AAGCCATAGTCGCCGAGAACCAGAAATGGGGACGTCGAGTGACAGAAGAATTGAAAAAGT
                      ____________________________________________________________
consensus             AAGCCATAGTCGCCGAGAACCAGAAATGGGGACGTCGAGTGACAGAAGAATTGAAAAAGT
 
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JMFF005O18+           GGCGTCAAAAC                                                 
rJMFF005O18-          GGCGTCAAAAC                                                 
JMFN004D19+           GGCGTCAAAACAGGTGGCGCGGGGGCGGTAATACGGTCAATGTAGCTGGCTTGAGGATCC
                      ____________________________________________________________
consensus             GGCGTCAAAACAGGTGGCGCGGGGGCGGTAATACGGTCAATGTAGCTGGCTTGAGGATCC