clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF010C11 | Sequence | 483 | 006104 (5) | ref|XP_009611154.1| | 2e-63 | PREDICTED: U-box domain-containing protein 45-like [Nicotiana tomentosiformis] | 785 | 006104 (5) | ref|XP_006482142.1| | 7e-75 | PREDICTED: U-box domain-containing protein 4-like [Citrus sinensis] |
JMFF049J04 | Sequence | 610 | 001907 (4) | ref|XP_004231992.1| | 3e-46 | PREDICTED: U-box domain-containing protein 2 isoform X2 [Solanum lycopersicum] | 608 | 006104 (5) | ref|XP_006482142.1| | 3e-72 | PREDICTED: U-box domain-containing protein 4-like [Citrus sinensis] |
JMFF050G09 | Sequence | 550 | 006104 (5) | ref|XP_006357776.1| | 4e-38 | PREDICTED: U-box domain-containing protein 4-like isoform X1 [Solanum tuberosum | 527 | 006104 (5) | ref|XP_006357776.1| | 5e-33 | PREDICTED: U-box domain-containing protein 4-like isoform X1 [Solanum tuberosum |
This contig is upended
. : . : . : . : . : . :
JMFF010C11- GTTTTCTTCAGTCCAAG
____________________________________________________________
consensus GTTTTCTTCAGTCCAAG
. : . : . : . : . : . :
JMFF010C11- AATGCGATTCTGCAAGGGCATGCGACTGCATCGCTCCTCACCCTGTCTGCTTCTCCTGTC
____________________________________________________________
consensus AATGCGATTCTGCAAGGGCATGCGACTGCATCGCTCCTCACCCTGTCTGCTTCTCCTGTC
. : . : . : . : . : . :
JMFF010C11- ACGAAGCCGATTATAAGTGCTTCTGGTGCAATCCCTCTTCTCGTGGAAGTCCTAAGAAAC
____________________________________________________________
consensus ACGAAGCCGATTATAAGTGCTTCTGGTGCAATCCCTCTTCTCGTGGAAGTCCTAAGAAAC
. : . : . : . : . : . :
JMFF010C11- GGGAGCCCCCCGCAGTCTAAGGCTGATGCTGTGATGGCTCTTTACAATCTGTCGTCTTAT
____________________________________________________________
consensus GGGAGCCCCCCGCAGTCTAAGGCTGATGCTGTGATGGCTCTTTACAATCTGTCGTCTTAT
. : . : . : . : . : . :
JMFF010C11- GAAGGCAATATAAGTCCAATCCTTGAGACGGAACCAATTCCTGGTATAGTTAGTTTGCTG
____________________________________________________________
consensus GAAGGCAATATAAGTCCAATCCTTGAGACGGAACCAATTCCTGGTATAGTTAGTTTGCTG
. : . : . : . : . : . :
JMFF010C11- AAATCCTGTAAAAGATCTTCGAAAACCGCTGAAAAATGCGTTGCCCTCATCGAATCTTTA
rJMFF010C11+ ATCTTTA
____________________________________________________________
consensus AAATCCTGTAAAAGATCTTCGAAAACCGCTGAAAAATGCGTTGCCCTCATCGAATCTTTA
. : . : . : . : . : . :
JMFF010C11- GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
rJMFF010C11+ GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
____________________________________________________________
consensus GTTGGTTATGAGGAGGGTAGGAGCGCGTTGACATCTGAAGAAGGCGGAGTACTCACGGTG
. : . : . : . : . : . :
JMFF010C11- GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
rJMFF049J04+ CTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
rJMFF010C11+ GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
____________________________________________________________
consensus GTAGAAGTGCTCGAAAGCGGGTCCCTTCAGAGCCGAGAGCATGCTCTCGGAGCCCTTTTG
. : . : . : . : . : . :
JMFF010C11- ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTA
rJMFF049J04+ ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
rJMFF010C11+ ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
____________________________________________________________
consensus ACAATGTGTGAGAGTGACCGGTGTAAATATAGGGAACCGATTCTTAGAGAAGGCGTAATC
. : . : . : . : . : . :
rJMFF049J04+ CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
rJMFF010C11+ CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
JMFF050G09- GGCACAAACG
____________________________________________________________
consensus CCCGGGCTCCTAGAGCTGACGGTTCAGGGAACACCAAAGTCTCAAGCAAAGGCACAAACG
. : . : . : . : . : . :
rJMFF049J04+ CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
rJMFF010C11+ CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
rJMFF050G09+ TGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
JMFF050G09- CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
____________________________________________________________
consensus CTCCTAAGATTGCTGAGAGACTCCCCGTTCCCGAGGTCCGAGCTTCAGGCTGACACGCTA
. : . : . : . : . : . :
rJMFF049J04+ GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
rJMFF010C11+ GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
rJMFF050G09+ GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
JMFF050G09- GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
____________________________________________________________
consensus GAGAACATCGTTAGCAACCTCATATCGCAGATAGACGGGGAGGAGCAACCCGGGAAGGCA
. : . : . : . : . : . :
rJMFF049J04+ AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATGGAGCAAAGCCTGAGGCATTTACAG
rJMFF010C11+ AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATGGAGCAAAGCCTGAGGCATTTACAG
rJMFF050G09+ AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
JMFF050G09- AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
____________________________________________________________
consensus AAGGAGATGCTCGCTGAAATGGTGCAAGTTAGCATTGAGCAAAGCCTGAGGCATTTACAG
. : . : . : . : . : . :
rJMFF049J04+ CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
rJMFF010C11+ CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
rJMFF050G09+ CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
JMFF050G09- CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
____________________________________________________________
consensus CAAAGGGCGCTGGTGTGCACCCCGGGCGATCTGTCTGTCACTACCCGCACCTCGAAAATT
. : . : . : . : . : . :
rJMFF049J04+ CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
rJMFF010C11+ CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
rJMFF050G09+ CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
JMFF050G09- CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
____________________________________________________________
consensus CCTTCGAAATGAATCCGTTTCACAACATCATCCCACGCTTTCTTCCCTTATTACCGGGGG
. : . : . : . : . : . :
rJMFF049J04+ TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
rJMFF010C11+ TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
rJMFF050G09+ TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
JMFF050G09- TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
____________________________________________________________
consensus TTGTCTTCCCGCTCCCTCTCTTGTAATTGCGAGCTTTGTGGTATCAGTTTTCTGTGCTAG
. : . : . : . : . : . :
rJMFF049J04+ GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
rJMFF010C11+ GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
rJMFF050G09+ GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
JMFF050G09- GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
____________________________________________________________
consensus GAAATAAAGATCTCTCTATAGTAAAACAATGCCAGTCCAGGCCCCTTGTTATGGGTATCT
. : . : . : . : . : . :
rJMFF049J04+ GGTGACTGGTCGATGTCGATAAATCTAAA
rJMFF010C11+ GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
rJMFF050G09+ GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
JMFF050G09- GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
____________________________________________________________
consensus GGTGACTGGTCGATGTCGATAAATCTAAAAGGAAATCACAGTGTTTGTAAGCTTAGCTTT
. : . : . : . : . : . :
rJMFF010C11+ TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTA
rJMFF050G09+ TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTA
JMFF050G09- TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTATT
____________________________________________________________
consensus TAACATGGCTTTTGTAACATATACTGTGTATTGAAGGTTACATGATCTGTGAGGTTTATT