Contig 006082:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002C19Sequence364006082 (4)ref|XP_009794665.1|9e-40PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho737009630 (4)gb|EYU29487.1|1e-126hypothetical protein MIMGU_mgv1a0028802mg, partial [Erythranthe guttata] gb|EYU
JMFF008L03Sequence204006082 (4)ref|XP_004232400.1|1e-17PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho824009630 (4)ref|XP_004166314.1|6e-132PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho
JMFF046F22Sequence444006082 (4)ref|XP_009794665.1|5e-63PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho382009630 (4)ref|XP_006573312.1|2e-33PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochond
JMFF051E02Sequence621006082 (4)ref|XP_004232400.1|9e-109PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho384009630 (4)ref|XP_009794664.1|1e-32PREDICTED: succinate dehydrogenase [ubiquinone] flavoprotein subunit 1, mitocho

Alignment

This contig is upended


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JMFF051E02+                                                TGCAACAAAGCATGACCAGTCCG
                      ____________________________________________________________
consensus                                                  TGCAACAAAGCATGACCAGTCCG
 
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JMFF051E02+           ATCAGCAGCACATGCACAACGATATGCTTGTCCACCTTTTCCAAAATTAAGACTCTGACC
                      ____________________________________________________________
consensus             ATCAGCAGCACATGCACAACGATATGCTTGTCCACCTTTTCCAAAATTAAGACTCTGACC
 
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JMFF051E02+           ACCAAATGCACGTTGGTATATTTTCCCATCTTCTGTTCGGGAGAATGGCAGCCCATAATT
                      ____________________________________________________________
consensus             ACCAAATGCACGTTGGTATATTTTCCCATCTTCTGTTCGGGAGAATGGCAGCCCATAATT
 
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JMFF051E02+           CTCAAGTTCTATAACTGCTTTTGGTGCTTCCCTACACATGTATTGAATAGCATCCTGATC
JMFF046F22+                                                      TGAATAGCATCCTGATC
                      ____________________________________________________________
consensus             CTCAAGTTCTATAACTGCTTTTGGTGCTTCCCTACACATGTATTGAATAGCATCCTGATC
 
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JMFF051E02+           ACCTAGCCAATCGCTTCCTTTAACTGTATCATACATGTGCCACCTCCAATCATCCTCAGT
JMFF002C19+                                                                  TCAGT
JMFF046F22+           ACCTAGCCAATCGCTTCCTTTAACTGTATCATACATGTGCCACCTCCAATCATCCTCAGT
                      ____________________________________________________________
consensus             ACCTAGCCAATCGCTTCCTTTAACTGTATCATACATGTGCCACCTCCAATCATCCTCAGT
 
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JMFF051E02+           CATGTTTCCTAATGCAGCATTTATACCACCCTGAGCTGCAACAGTGTGAGAACGAGTAGG
JMFF002C19+           CATGTTTCGTAATGCAGCATTTATACCACCCTGAGCTGCAACAGTGTGAGAACGAGTAGG
JMFF046F22+           CATGTTTCCTAATGCAGCATTTATACCACCCTGAGCTGCAACAGTGTGAGAACGAGTAGG
                      ____________________________________________________________
consensus             CATGTTTCCTAATGCAGCATTTATACCACCCTGAGCTGCAACAGTGTGAGAACGAGTAGG
 
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JMFF051E02+           AAATAGCTTGGTGATGCATGCTGTATTGAATCCATGCTCAGACAACCCTATTGCCGCCCT
JMFF002C19+           AAATAGCTTGGTGATGCATGCTGTATTGAATCCATGCTCAGACAACCCTATTGCCGCCCT
JMFF046F22+           AAATAGCTTGGTGATGCATGCTGTATTGAATCCATGCTCAGACAACCCTATTGCCGCCCT
                      ____________________________________________________________
consensus             AAATAGCTTGGTGATGCATGCTGTATTGAATCCATGCTCAGACAACCCTATTGCCGCCCT
 
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JMFF051E02+           AAGCCCTGCACCTCCTGCACCTACCACCACAGCATCATATGTGTGATCAACCACTGTATA
JMFF002C19+           AAGCCCTGCACCTCCTGCACCTACCACCACAGCATCATATGTGTGATCAACCACTGTATA
JMFF008L03+                                              CATATGTGTGATCAACCACTGTATA
JMFF046F22+           AAGCCCTGCACCTCCTGCACCTACCACCACAGCATCATATGTGTGATCAACCACTGTATA
                      ____________________________________________________________
consensus             AAGCCCTGCACCTCCTGCACCTACCACCACAGCATCATATGTGTGATCAACCACTGTATA
 
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JMFF051E02+           CGAAGACCCGCCCACATTAGTTTGAGATGAGAAGAGTCGCCGGAAATGAGAACGGCCGGC
JMFF002C19+           CGAAGACCCGCCCACATTAGTTTGAGATGAGAAGAGTCGCCGGAAATGAGAACGGCCGGC
JMFF008L03+           CGAAGACCCGCCCACATTAGTTTGAGATGAGAAGAGTCGCCGGAAATGAGAACGGCCGGC
JMFF046F22+           CGAAGACCCGCCCACATTAGTTTGAGATGAGAAGAGTCGCCGGAAATGAGAACGGCCGGC
                      ____________________________________________________________
consensus             CGAAGACCCGCCCACATTAGTTTGAGATGAGAAGAGTCGCCGGAAATGAGAACGGCCGGC
 
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JMFF051E02+           GATTGATCTGTCGGATGGAATGCGCAGGCCACGCGACACACAGCGCCACATCTCTTGGAG
JMFF002C19+           GATTGATCTGTCGGATGGAATGCGCAGGCCACGCGACACACAGCGCCACATCTCTTGGAG
JMFF008L03+           GATTGATCTGTCGGATGGAATGCGCAGGCCACGCGACACACAGCGCCACATCTCTTGGAG
JMFF046F22+           GATTGATCTGTCGGATGGAATGCGCAGGCCACGCGACACACAGCGCCACATCTCTTGGAG
                      ____________________________________________________________
consensus             GATTGATCTGTCGGATGGAATGCGCAGGCCACGCGACACACAGCGCCACATCTCTTGGAG
 
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JMFF051E02+           ATTCTGGTTATTGGGCTTGCAATGCTAACTATGGAGATCGAAGAGAGCCGGAGAAGAG  
JMFF002C19+           ATTCTGGTTATTGGGCTTGCAATGCTAACTATGGAGATCGAAGAGAGCCGGAGAAGAG  
JMFF008L03+           ATTCTGGTTATTGGGCTTGCAATGCTAACTATGGAGATCGAAGAGAGCCGGAGAAGAG  
JMFF046F22+           ATTCTGGTTATTGGGCTTGCAATGCTAACTATGGAGATCGAAGAGAGCCGGAGAAGAGGC
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consensus             ATTCTGGTTATTGGGCTTGCAATGCTAACTATGGAGATCGAAGAGAGCCGGAGAAGAGGC