Contig 006070:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF044B23Sequence643006070 (4)ref|XP_009804503.1|4e-109PREDICTED: exosome complex exonuclease RRP46 homolog [Nicotiana sylvestris]660006070 (4)gb|KJB82884.1|2e-24hypothetical protein B456_013G218900 [Gossypium raimondii]
JMFN016G19Sequence527006070 (4)ref|XP_008220073.1|9e-78PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume]
JMFN018C04Sequence602006070 (4)ref|XP_008220073.1|2e-75PREDICTED: exosome complex exonuclease RRP46 homolog [Prunus mume]

Alignment

This contig is upended


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rJMFF044B23- CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTT
                      ____________________________________________________________
consensus CCTTATGGCGGATCACCCTGGAGAGTTTTTTTTTTTTTT
 
. : . : . : . : . : . :
rJMFF044B23- TTGGAAAACCAAAACTATAACTCTAGCTACTCAGTACACCTTCAAAGTTCGTTGAATGAA
                      ____________________________________________________________
consensus TTGGAAAACCAAAACTATAACTCTAGCTACTCAGTACACCTTCAAAGTTCGTTGAATGAA
 
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rJMFF044B23- TACAAATGAGTGATTTAAAGTAAACCAAAATCAAATAAATATTGTAATTATGAACAAATG
                      ____________________________________________________________
consensus TACAAATGAGTGATTTAAAGTAAACCAAAATCAAATAAATATTGTAATTATGAACAAATG
 
. : . : . : . : . : . :
rJMFF044B23- AAAATTTAGTCAGACTAATGCAAGCTAGCATGTTCTGAACATGATGTAACAACAAGATTA
                      ____________________________________________________________
consensus AAAATTTAGTCAGACTAATGCAAGCTAGCATGTTCTGAACATGATGTAACAACAAGATTA
 
. : . : . : . : . : . :
rJMFF044B23- TGCGAATGGGATGATACAATACCACCCGACACCCAACCTAACTCAAAAACCTTTCACACA
JMFN018C04+ CTTTCACACA
                      ____________________________________________________________
consensus TGCGAATGGGATGATACAATACCACCCGACACCCAACCTAACTCAAAAACCTTTCACACA
 
. : . : . : . : . : . :
rJMFF044B23- GCCATATATTCTACTAGCGTTTGTCAGCAAGCTAAGCAGCAGTTAAGAAAAGGAATCCAA
JMFN018C04+ GCCATATATTCTACTAGCGTTTGTCAGCAAGCTAAGCAGCAGTTAAGAAAAGGAATCCAA
                      ____________________________________________________________
consensus GCCATATATTCTACTAGCGTTTGTCAGCAAGCTAAGCAGCAGTTAAGAAAAGGAATCCAA
 
. : . : . : . : . : . :
rJMFF044B23- CAGATTCTTTCTTGCAGTCGTTGAGATTCCATTATCTATCTGTCAACTCCACACCAGCCT
JMFN018C04+ CAGATTCTTTCTTGCAGTCGTTGAGATTCCATTATCTATCTGTCAACTCCACACCAGCTT
JMFN016G19+ TGCAGTCGTTGAGATTCCATTATCTATCTGTCAACTCCACACCAGCTT
                      ____________________________________________________________
consensus CAGATTCTTTCTTGCAGTCGTTGAGATTCCATTATCTATCTGTCAACTCCACACCAGCTT
 
. : . : . : . : . : . :
rJMFF044B23- TAATTACAAGATTCATTTCCCAACTGGGACTGCAATCAAGCTTCTTCTCAGATACTCTGA
JMFN018C04+ TAATTACAAGATTCATTTCCCAACTGGGACTGCAATCAAGCTTCTTCTCAGATACTCTGA
JMFN016G19+ TAATTACAAGATTCATTTCCCAACTGGGACTGCAATCAAGCTTCTTCTCAGATACTCTGA
                      ____________________________________________________________
consensus TAATTACAAGATTCATTTCCCAACTGGGACTGCAATCAAGCTTCTTCTCAGATACTCTGA
 
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rJMFF044B23- TAGCTTCTCACTGGCAGCACGCGCTCGATTCAGACACAGGAGGTAATCATCGACTTCCAA
JMFN018C04+ TAGCTTCTCACTGGCAGCACGCGCTCGATTCAGACACAGGAGGTAATCATCGACTTCCAA
JMFN016G19+ TAGCTTCTCACTGGCAGCACGCGCTCGATTCAGACACAGGAGGTAATCATCGACTTCCAA
                      ____________________________________________________________
consensus TAGCTTCTCACTGGCAGCACGCGCTCGATTCAGACACAGGAGGTAATCATCGACTTCCAA
 
. : . : . : . : . : . :
rJMFF044B23- TTTGCCATGCGTAACAGATGTTATAATCCCGCATTCCATAGGTTCACCTCCCGCCTGCAA
JMFN018C04+ TTTGCCATGCGTAACAGATGTTATAATCCCGCATTCCATAGGTTCACCTCCCGCCTGCAA
JMFN016G19+ TTTGCCATGCGTAACAGATGTTATAATCCCGCATTCCATAGGTTCACCTCCCGCCTGCAA
                      ____________________________________________________________
consensus TTTGCCATGCGTAACAGATGTTATAATCCCGCATTCCATAGGTTCACCTCCCGCCTGCAA
 
. : . : . : . : . : . :
rJMFF044B23- CGATTCTTTGGGGAGGGCCAAATGCGGGGAGTTTGGGAAAACCAGATATACNAATGCTTT
JMFN018C04+ CGATTCTTTGGGGAGGGCCAAATGCGGGGAGTTTGGGAAAACCAGATATACAAATGCTTT
JMFN016G19+ CGATTCTTTGGGGAGGGCCAAATGCGGGGAGTTTGGGAAAACCAGATATACAAATGCTTT
JMFF044B23+ CCAAATGCGGGGAGTTTGGGAAAACCAGATATACAAATGCTTT
                      ____________________________________________________________
consensus CGATTCTTTGGGGAGGGCCAAATGCGGGGAGTTTGGGAAAACCAGATATACAAATGCTTT
 
. : . : . : . : . : . :
rJMFF044B23- CATTTTCTGCTCTTCTAACT
JMFN018C04+ CATTTTCTGCTCTTCTAACTTGTCAGGGTCCAGCACAACATATTTACTCTCTGCCAGGCA
JMFN016G19+ CATTTTCTGCTCTTCTAACTTGTCAGGGTCCAGCACAACATATTTACTCTCTGCCAGGCA
JMFF044B23+ CATTTTCTGCTCTTCTAACTNGTCAGGGTCCAGCACAACATTTTTACTCTCTGCCAGGCA
                      ____________________________________________________________
consensus CATTTTCTGCTCTTCTAACTTGTCAGGGTCCAGCACAACATATTTACTCTCTGCCAGGCA
 
. : . : . : . : . : . :
JMFN018C04+ GCAACAAATTGCAACAGCAAGGTGCTTCAAAGGAATTCCAGCATCTACAAGAGCAGCACA
JMFN016G19+ GCAACAAATTGCAACAGCAAGGTGCTTCAAAGGAATTCCAGCATCTACAAGAGCAGCACA
JMFF044B23+ GCAACAAATTGCAACAGCAAGGTGCTTCAAAGGAATTCCAGCATCTACAAGAGCAGCACA
                      ____________________________________________________________
consensus GCAACAAATTGCAACAGCAAGGTGCTTCAAAGGAATTCCAGCATCTACAAGAGCAGCACA
 
. : . : . : . : . : . :
JMFN018C04+ CGCAGCATTTATTGCACAGGGAAGAAGAGCACCATCATCATTCACAACCTGAATTATTAC
JMFN016G19+ CGCAGCATTTATTGCACAGGGAAGAAGAGCACCATCATCATTCACAACCTGAATTATTAC
JMFF044B23+ CGCAGCATTTATTGCACAGGGAAGAAGAGCACCATCATCATTCACAACCTGAATTATTAC
                      ____________________________________________________________
consensus CGCAGCATTTATTGCACAGGGAAGAAGAGCACCATCATCATTCACAACCTGAATTATTAC
 
. : . : . : . : . : . :
JMFN018C04+ AGATGTTGTAGTATTTGGATGAACCGTCAAAAGGCAAATGCTTTGCAAAGTC
JMFN016G19+ AGATGTTGTAGTATTTGGATGAACCGTCAAAAGGCAAATGCTTTGCAAAGTC
JMFF044B23+ AGATGTTGTAGTATTTGGATGAACCGTCAAAAGGCAAATGCTTTGCAAAGTCCTCTTCAC
                      ____________________________________________________________
consensus AGATGTTGTAGTATTTGGATGAACCGTCAAAAGGCAAATGCTTTGCAAAGTCCTCTTCAC
 
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JMFF044B23+ TATCATCTCACACTCCTTCTCCTGTTTACCAATCTGCCCCGTTTTGGGCTTCCAGATGAC
                      ____________________________________________________________
consensus TATCATCTCACACTCCTTCTCCTGTTTACCAATCTGCCCCGTTTTGGGCTTCCAGATGAC
 
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JMFF044B23+ CTCGATGCAAGCCTTTTCAGGATTTTCATTCTTTTTCGTCCCAGCCTTGGGTCCATAAAC
                      ____________________________________________________________
consensus CTCGATGCAAGCCTTTTCAGGATTTTCATTCTTTTTCGTCCCAGCCTTGGGTCCATAAAC
 
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JMFF044B23+ TGCAGCCAGAACTTTTGTCTCTCCTTGGGACCAACTGGCGGAGCCATGGGCACGGTTGAG
                      ____________________________________________________________
consensus TGCAGCCAGAACTTTTGTCTCTCCTTGGGACCAACTGGCGGAGCCATGGGCACGGTTGAG
 
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JMFF044B23+ GACGCCACGGGAGCAAGCCAGTGGCCTGAGCTGGTTCGCCGTTCGACCATCGCGTCTGTC
                      ____________________________________________________________
consensus GACGCCACGGGAGCAAGCCAGTGGCCTGAGCTGGTTCGCCGTTCGACCATCGCGTCTGTC
 
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JMFF044B23+ TATCTCCATCACCAGAAGGTAGTGAAAGTGTGAAACTCTGAATTTCAGTGTTAATAGTTC
                      ____________________________________________________________
consensus TATCTCCATCACCAGAAGGTAGTGAAAGTGTGAAACTCTGAATTTCAGTGTTAATAGTTC
 
. : . : . : . : . : . :
JMFF044B23+ GAGGTTTAGCTAGGGTTTAGTCAGAGCTCTGGACAACGGACAGGAGGGAAGAGTTTAAAC
                      ____________________________________________________________
consensus GAGGTTTAGCTAGGGTTTAGTCAGAGCTCTGGACAACGGACAGGAGGGAAGAGTTTAAAC