Contig 006043:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF038L14Sequence474006043 (3)715011129 (3)ref|XP_004228906.1|2e-50PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Solanum lycopersicu
JMFF047D02Sequence610006043 (3)ref|XP_009772751.1|2e-50PREDICTED: cleavage stimulation factor subunit 3 isoform X2 [Nicotiana sylvestr
JMFS028D05Sequence651006043 (3)ref|XP_009772748.1|1e-65PREDICTED: cleavage stimulation factor subunit 3 isoform X1 [Nicotiana sylvestr

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS028D05+ TAAGAATGCAATGTACTCCATCCAAACAGGG
                      ____________________________________________________________
consensus TAAGAATGCAATGTACTCCATCCAAACAGGG
 
. : . : . : . : . : . :
JMFF047D02+ GCATGAACTCATAAGCTTTCCTAGTCTCT
JMFS028D05+ CCTGAGGCAATGTCTACTCCGACATAGTTAAGCATGAACTCATAAGCTTTCCTAGTCTCT
                      ____________________________________________________________
consensus CCTGAGGCAATGTCTACTCCGACATAGTTAAGCATGAACTCATAAGCTTTCCTAGTCTCT
 
. : . : . : . : . : . :
JMFF047D02+ TCCTGACCCTCAGCTCCCCTCTTATCATTTACCTTTCTGATAAAACGAATATAACAGCGC
JMFS028D05+ TCCTGACCCTCAGCTCCCCTCTTATCATTTACCTTTCTGATAAAACGAATATAACAGCGC
                      ____________________________________________________________
consensus TCCTGACCCTCAGCTCCCCTCTTATCATTTACCTTTCTGATAAAACGAATATAACAGCGC
 
. : . : . : . : . : . :
JMFF047D02+ CAAAGAGGAATTTGCAGACAGTTTAATAAACAACGACTAAAAATTTGCTTTGTGGCATCA
JMFS028D05+ CAAAGAGGAATTTGCAGACAGTTTAATAAACAACGACTAAAAATTTGCTTTGTGGCATCA
                      ____________________________________________________________
consensus CAAAGAGGAATTTGCAGACAGTTTAATAAACAACGACTAAAAATTTGCTTTGTGGCATCA
 
. : . : . : . : . : . :
JMFF047D02+ TCATTATTTACAGCCATATGTGCCTCGACATACTGTTTCCAATATTTCGCAGCAGTAGGA
JMFS028D05+ TCATTATTTACAGCCATATGTGCCTCGACATACTGTTTCCAATATTTCGCAGCAGTAGGA
                      ____________________________________________________________
consensus TCATTATTTACAGCCATATGTGCCTCGACATACTGTTTCCAATATTTCGCAGCAGTAGGA
 
. : . : . : . : . : . :
JMFF047D02+ AAAGTAGACATCAGTTGCTCATATATAGGCACTGCCTCAGCAATTGGCAAACGCATTGCC
JMFS028D05+ AAAGTAGACATCAGTTGCTCATATATAGGCACTGCCTCAGCAATTGGCAAACGCATTGCC
                      ____________________________________________________________
consensus AAAGTAGACATCAGTTGCTCATATATAGGCACTGCCTCAGCAATTGGCAAACGCATTGCC
 
. : . : . : . : . : . :
JMFF047D02+ TCGTTGGCGACAATTTCTGCAGCTTCAACATTGTACTTACTGTCCGCCATTGTTGTACAA
JMFS028D05+ TCGTTGGCGACAATTTCTGCAGCTTCAACATTGTACTTACTGTCCGCCATTGTTGTACAA
                      ____________________________________________________________
consensus TCGTTGGCGACAATTTCTGCAGCTTCAACATTGTACTTACTGTCCGCCATTGTTGTACAA
 
. : . : . : . : . : . :
JMFF047D02+ GTATATGACTGACACCAGTCCAACTTACTGGGAAATTCTGAGAGGCTGAGATTGTGAGAC
JMFS028D05+ GTATATGACTGACACCAGTCCAACTTACTGGGAAATTCTGAGAGGCTGAGATTGTGAGAC
                      ____________________________________________________________
consensus GTATATGACTGACACCAGTCCAACTTACTGGGAAATTCTGAGAGGCTGAGATTGTGAGAC
 
. : . : . : . : . : . :
JMFF047D02+ ACTGACTCACTGAGGACTCCTGCTGGGCTGCTGACTGGCGAAATTAGGGC
JMFS028D05+ ACTGACTCACTGAGGACTCCTGCTGGGCTGCTGACTGGCGAAATTAGGGCACAGAGGAAT
JMFF038L14+ TGAGGACTCCTGCTGGGCTGCTGACTGGCGANATTATGGCACAGAGGAAT
                      ____________________________________________________________
consensus ACTGACTCACTGAGGACTCCTGCTGGGCTGCTGACTGGCGAAATTAGGGCACAGAGGAAT
 
. : . : . : . : . : . :
JMFS028D05+ GGCGAGTGGCGAGGTGCGACCGTTCGGCA
JMFF038L14+ GGCGAGTGGCGAGGTGCGACCGTTCGGCACAGACAGGGATAGAGCGATAGAGCCACAGAT
                      ____________________________________________________________
consensus GGCGAGTGGCGAGGTGCGACCGTTCGGCACAGACAGGGATAGAGCGATAGAGCCACAGAT
 
. : . : . : . : . : . :
JMFF038L14+ GATCGAGGACTCCTGAGTCCTGAGAGGAGACGAGAGACCGAGAGGGACAGTAGCCGGTAC
                      ____________________________________________________________
consensus GATCGAGGACTCCTGAGTCCTGAGAGGAGACGAGAGACCGAGAGGGACAGTAGCCGGTAC
 
. : . : . : . : . : . :
JMFF038L14+ TCCGGTGGTAGCGAGAGGCGAGAGGCAGAGAGGCGGTCAGGCTGAGAGTAAGAGAGACGC
                      ____________________________________________________________
consensus TCCGGTGGTAGCGAGAGGCGAGAGGCAGAGAGGCGGTCAGGCTGAGAGTAAGAGAGACGC