Contig 006008:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020N18Sequence565006008 (8)ref|XP_006367734.1|2e-07PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]758012431 (6)gb|ACJ85808.1|1e-66unknown [Medicago truncatula]
JMFF031C03Sequence495006008 (8)615012431 (6)ref|XP_006367734.1|3e-42PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMFF044J23Sequence631006008 (8)ref|XP_009629595.1|2e-27PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]616012431 (6)ref|XP_006367734.1|7e-37PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMFS097D01Sequence627006008 (8)ref|XP_009629595.1|9e-30PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMFS135G12Sequence595006008 (8)ref|XP_009629595.1|3e-53PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMFS158G01Sequence579006008 (8)ref|XP_009629595.1|4e-21PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]
JMSF009B14Sequence243006008 (8)755012431 (6)ref|XP_006367734.1|4e-79PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]
JMSF040N15Sequence650006008 (8)ref|XP_009629595.1|6e-20PREDICTED: probable pectin methyltransferase QUA2 [Nicotiana tomentosiformis]809012431 (6)ref|XP_006367734.1|2e-80PREDICTED: probable pectin methyltransferase QUA2-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS135G12+ AAAGCCTAACTC
                      ____________________________________________________________
consensus AAAGCCTAACTC
 
. : . : . : . : . : . :
JMFS135G12+ GAGACTTTCTGACACATTAAAGCATGGAACATAATTCTCAGCCTCGGGTGGACAATACTC
                      ____________________________________________________________
consensus GAGACTTTCTGACACATTAAAGCATGGAACATAATTCTCAGCCTCGGGTGGACAATACTC
 
. : . : . : . : . : . :
JMFS135G12+ CAGATCCTTCAATTTAGAAGAACCAAGAGACAAGTGTCCAATGTCCTTCAAGTCCAACAC
JMFS097D01+ TCAAGTCCAACAC
JMFF044J23+ C
                      ____________________________________________________________
consensus CAGATCCTTCAATTTAGAAGAACCAAGAGACAAGTGTCCAATGTCCTTCAAGTCCAACAC
 
. : . : . : . : . : . :
JMFS135G12+ TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
JMFS097D01+ TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
JMFF044J23+ TACTTGTTCTGNAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
                      ____________________________________________________________
consensus TACTTGTTCTTGAAGCCTACGGTACCCATGATATATTTTACCCCTGGATGAGCTCGTTAT
 
. : . : . : . : . : . :
JMFS135G12+ TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFS097D01+ TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFF044J23+ TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
JMFS158G01+ AAG
JMSF040N15+ CCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
                      ____________________________________________________________
consensus TGAGATTGTCCACCAAAAGGATCCAGTAAGAGCAAGAACTACTATGGCAACTAAGCTAAG
 
. : . : . : . : . : . :
JMFS135G12+ TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFS097D01+ TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFF044J23+ TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMFS158G01+ TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
JMSF040N15+ TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
                      ____________________________________________________________
consensus TTTGAGCAAAAGCAATGTGAACTTAATCTGACTTCGCCCAGCTCCAGGGCTGAAGGGATT
 
. : . : . : . : . : . :
JMFS135G12+ AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFS097D01+ AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFF044J23+ AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFS158G01+ AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMSF040N15+ AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
JMFF020N18+ TAGGCGATTTGTCAGTGGAAAGAAT
                      ____________________________________________________________
consensus AGATAGATAACCATTTTCACTAACACCATTCTTTGTAGGCGATTTGTCAGTGGAAAGAAT
 
. : . : . : . : . : . :
JMFS135G12+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFS097D01+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF044J23+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFS158G01+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMSF040N15+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF020N18+ CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
JMFF031C03+ TTGACTATGATCAAA
                      ____________________________________________________________
consensus CCGTAAAAGAAATTTCATAGAGAGGAAACTCTGATCACCAGCTGATTGACTATGATCAAA
 
. : . : . : . : . : . :
JMFS135G12+ ATCTTCTTTCTCTATTTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFS097D01+ ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF044J23+ ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFS158G01+ ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMSF040N15+ ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF020N18+ ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
JMFF031C03+ ATCTTCTTTCTNTATNNTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
                      ____________________________________________________________
consensus ATCTTCTTTCTCTATCTTATCTTTCATCTGAGAGTCATCCAAGAAGCTCTGACTGTTCCC
 
. : . : . : . : . : . :
JMFS135G12+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTA
JMFS097D01+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF044J23+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFS158G01+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMSF040N15+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF020N18+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
JMFF031C03+ TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
                      ____________________________________________________________
consensus TGAGTGCCGGCCCCCACCTCCAACAGATAAACCTCTATGCAGTGGCCTAGCCATAATCCG
 
. : . : . : . : . : . :
JMFS097D01+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF044J23+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFS158G01+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMSF009B14+ GGCTCAG
JMSF040N15+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF020N18+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
JMFF031C03+ CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTNGGCTCAG
                      ____________________________________________________________
consensus CACTCCAGAAATGTATAAACTCAAAGAATCACTCACTCACTCACTCGCCGTTCGGCTCAG
 
. : . : . : . : . : . :
JMFS097D01+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF044J23+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFS158G01+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMSF009B14+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMSF040N15+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF020N18+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
JMFF031C03+ TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
                      ____________________________________________________________
consensus TAAGTAAATAGTAGGCGAGTAAGTAAAAGAGTTGGTAAGCAAAGCTCGCTGATTGTTGAA
 
. : . : . : . : . : . :
JMFS097D01+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF044J23+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFS158G01+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMSF009B14+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMSF040N15+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF020N18+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
JMFF031C03+ TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
                      ____________________________________________________________
consensus TAACTCTCCTCTTCCCAGCTGCCACCCGTGAAACGCAAACAAACCATCAATTTTCTCTCT
 
. : . : . : . : . : . :
JMFS097D01+ CTCCCTCGTTTTTC
JMFF044J23+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTT
JMFS158G01+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMSF009B14+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMSF040N15+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMFF020N18+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
JMFF031C03+ CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
                      ____________________________________________________________
consensus CTCCCTCGTTTTTCCTCACTGCCTCTGCTTATCAAATTCAGCTCGGTCGACGCGGTTTTG
 
. : . : . : . : . : . :
JMFS158G01+ GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAA
JMSF009B14+ GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCG
JMSF040N15+ GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCG
JMFF020N18+ GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
JMFF031C03+ GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
                      ____________________________________________________________
consensus GAGTTTTTAGAGAGAGAGAGAAATGGAGAGTCCTAATCACTTGAAAGCTCGCTCGTGAAA
 
. : . : . : . : . : . :
JMFF020N18+ GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC
JMFF031C03+ GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC
                      ____________________________________________________________
consensus GACTTGAATCTGCCCCCTCGTCGGATTCATATACGTGACACCTTCTACGTACTAAAATCC