clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF014J11 | Sequence | 442 | 006001 (3) | ref|XP_010323878.1| | 1e-41 | PREDICTED: protein DGCR14 [Solanum lycopersicum] | 743 | 002613 (3) | ref|XP_006363025.1| | 1e-121 | PREDICTED: protein DGCR14-like [Solanum tuberosum] |
JMFF029B18 | Sequence | 578 | 006001 (3) | ref|XP_009762150.1| | 7e-60 | PREDICTED: protein DGCR14 [Nicotiana sylvestris] | 722 | 002613 (3) | ref|XP_006363025.1| | 4e-88 | PREDICTED: protein DGCR14-like [Solanum tuberosum] |
JMFF030C06 | Sequence | 567 | 006001 (3) | ref|XP_009762150.1| | 2e-58 | PREDICTED: protein DGCR14 [Nicotiana sylvestris] | 673 | 002613 (3) | ref|XP_006363025.1| | 8e-106 | PREDICTED: protein DGCR14-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMFF029B18+ AACAGCATTATCATTACTAT
____________________________________________________________
consensus AACAGCATTATCATTACTAT
. : . : . : . : . : . :
JMFF029B18+ TATTAGCATTATCGGCTACACTTGGAGTATGGGTCTTGTAAGCATCATCAAAGGGGGTGG
JMFF030C06+ TCTTGTAAGCATCATCAAAGGGGGTGG
____________________________________________________________
consensus TATTAGCATTATCGGCTACACTTGGAGTATGGGTCTTGTAAGCATCATCAAAGGGGGTGG
. : . : . : . : . : . :
JMFF029B18+ CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
JMFF014J11+ CCGA
JMFF030C06+ CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
____________________________________________________________
consensus CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
. : . : . : . : . : . :
JMFF029B18+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
JMFF014J11+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
JMFF030C06+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
____________________________________________________________
consensus GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
. : . : . : . : . : . :
JMFF029B18+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
JMFF014J11+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
JMFF030C06+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
____________________________________________________________
consensus CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
. : . : . : . : . : . :
JMFF029B18+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
JMFF014J11+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
JMFF030C06+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
____________________________________________________________
consensus AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
. : . : . : . : . : . :
JMFF029B18+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
JMFF014J11+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
JMFF030C06+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
____________________________________________________________
consensus TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
. : . : . : . : . : . :
JMFF029B18+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
JMFF014J11+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
JMFF030C06+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
____________________________________________________________
consensus TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
. : . : . : . : . : . :
JMFF029B18+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
JMFF014J11+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
JMFF030C06+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
____________________________________________________________
consensus GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
. : . : . : . : . : . :
JMFF029B18+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
JMFF014J11+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
JMFF030C06+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
____________________________________________________________
consensus ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
. : . : . : . : . : . :
JMFF029B18+ TTGAAATCGGATGGAGCA
JMFF014J11+ TTGAAATCGGATGGAGCA
JMFF030C06+ TTGAAATCGGATGGAGCAGACTAGCAGAGGATCGCTTTATAGGAATATATATACGGCGGT
____________________________________________________________
consensus TTGAAATCGGATGGAGCAGACTAGCAGAGGATCGCTTTATAGGAATATATATACGGCGGT