Contig 006001:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF014J11Sequence442006001 (3)ref|XP_010323878.1|1e-41PREDICTED: protein DGCR14 [Solanum lycopersicum]743002613 (3)ref|XP_006363025.1|1e-121PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF029B18Sequence578006001 (3)ref|XP_009762150.1|7e-60PREDICTED: protein DGCR14 [Nicotiana sylvestris]722002613 (3)ref|XP_006363025.1|4e-88PREDICTED: protein DGCR14-like [Solanum tuberosum]
JMFF030C06Sequence567006001 (3)ref|XP_009762150.1|2e-58PREDICTED: protein DGCR14 [Nicotiana sylvestris]673002613 (3)ref|XP_006363025.1|8e-106PREDICTED: protein DGCR14-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF029B18+ AACAGCATTATCATTACTAT
                      ____________________________________________________________
consensus AACAGCATTATCATTACTAT
 
. : . : . : . : . : . :
JMFF029B18+ TATTAGCATTATCGGCTACACTTGGAGTATGGGTCTTGTAAGCATCATCAAAGGGGGTGG
JMFF030C06+ TCTTGTAAGCATCATCAAAGGGGGTGG
                      ____________________________________________________________
consensus TATTAGCATTATCGGCTACACTTGGAGTATGGGTCTTGTAAGCATCATCAAAGGGGGTGG
 
. : . : . : . : . : . :
JMFF029B18+ CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
JMFF014J11+ CCGA
JMFF030C06+ CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
                      ____________________________________________________________
consensus CAGAGTTTCTGAAAAATGTCGAGCCGGGGGTTCGAAATTTACCTACACTGTCGGAACCGA
 
. : . : . : . : . : . :
JMFF029B18+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
JMFF014J11+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
JMFF030C06+ GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
                      ____________________________________________________________
consensus GGATCTTGCCGCGGCGGCGCTCAATAATTTTCAGCTGCGCATCGCGAATTTGAAGCGGGT
 
. : . : . : . : . : . :
JMFF029B18+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
JMFF014J11+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
JMFF030C06+ CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
                      ____________________________________________________________
consensus CGCCCGTGCGGACGGCCTCGAGCCAGTCGAGTCGATCCCGTAGCTTAGGAATGTCAGGGA
 
. : . : . : . : . : . :
JMFF029B18+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
JMFF014J11+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
JMFF030C06+ AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
                      ____________________________________________________________
consensus AGAAATCCCGCTCGATGATCTTCTCTATGGCGGCGACATAGGTATCTTCATCGAGGACTC
 
. : . : . : . : . : . :
JMFF029B18+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
JMFF014J11+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
JMFF030C06+ TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
                      ____________________________________________________________
consensus TGGTCATGCGATTTCTCGGGGCTGAATCTGTAATCGAAGAAGAACTGCTGTCGTTTTTCT
 
. : . : . : . : . : . :
JMFF029B18+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
JMFF014J11+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
JMFF030C06+ TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
                      ____________________________________________________________
consensus TGTGGATAGCGGAAGAATTAGGGTTAGGGATTTGGTCGGTAAGGGCTGGGGACGGTGACG
 
. : . : . : . : . : . :
JMFF029B18+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
JMFF014J11+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
JMFF030C06+ GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
                      ____________________________________________________________
consensus GAGTCGACAGGTGGCGCGGGGAGTGGCCCGGCGATAACAACATATCGATAAAAGGAAAAG
 
. : . : . : . : . : . :
JMFF029B18+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
JMFF014J11+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
JMFF030C06+ ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
                      ____________________________________________________________
consensus ATCGGAGAAGAACGTCGTCTAGGTTCTCGGCCGTAAATTTATGAGAAATTGATCGGAGAT
 
. : . : . : . : . : . :
JMFF029B18+ TTGAAATCGGATGGAGCA
JMFF014J11+ TTGAAATCGGATGGAGCA
JMFF030C06+ TTGAAATCGGATGGAGCAGACTAGCAGAGGATCGCTTTATAGGAATATATATACGGCGGT
                      ____________________________________________________________
consensus TTGAAATCGGATGGAGCAGACTAGCAGAGGATCGCTTTATAGGAATATATATACGGCGGT