| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF008O18 | Sequence | 486 | 005998 (10) | ref|XP_002301485.1| | 1e-85 | 60S ribosomal protein L18 [Populus trichocarpa] gb|EEE80758.1| 60S ribosomal pro | 192 | 005998 (10) | ref|XP_006359857.1| | 2e-09 | PREDICTED: 60S ribosomal protein L18-2-like [Solanum tuberosum] |
| JMFF009H24 | Sequence | 531 | 005998 (10) | ref|XP_002301485.1| | 9e-97 | 60S ribosomal protein L18 [Populus trichocarpa] gb|EEE80758.1| 60S ribosomal pro | 363 | 005998 (10) | ref|XP_010528904.1| | 2e-57 | PREDICTED: 60S ribosomal protein L18-2 [Tarenaya hassleriana] |
| JMFF020K16 | Sequence | 493 | 005998 (10) | ref|XP_002301485.1| | 4e-86 | 60S ribosomal protein L18 [Populus trichocarpa] gb|EEE80758.1| 60S ribosomal pro | 806 | 005998 (10) | ref|XP_009625475.1| | 2e-120 | PREDICTED: 60S ribosomal protein L18-2-like [Nicotiana tomentosiformis] |
| JMFF029I04 | Sequence | 582 | 005998 (10) | ref|XP_002301485.1| | 2e-110 | 60S ribosomal protein L18 [Populus trichocarpa] gb|EEE80758.1| 60S ribosomal pro | 633 | 005998 (10) | ref|XP_009625475.1| | 2e-104 | PREDICTED: 60S ribosomal protein L18-2-like [Nicotiana tomentosiformis] |
| JMSF012G20 | Sequence | 238 | 005998 (10) | ref|XP_002512455.1| | 4e-27 | 60S ribosomal protein L18, putative [Ricinus communis] gb|EEF49907.1| 60S riboso | 774 | 005998 (10) | ref|XP_009625475.1| | 2e-120 | PREDICTED: 60S ribosomal protein L18-2-like [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF012G20- A
rJMFF020K16- CTTTTTCGTGAGATTGTAAAATAATGCAA
____________________________________________________________
consensus CTTTTTCGTGAGATTGTAAAATAATGCAA
. : . : . : . : . : . :
rJMSF012G20- AAGTACAGCACACAGTAGTAGGGCCTAAAATCAAATTTCTAAACTTGAATTGAACAAATC
rJMFF020K16- AAGTACAGCACACAGTAGTAGGGCCTAAAATCAAATTTCTAAACTTGAATTGAACAAATC
____________________________________________________________
consensus AAGTACAGCACACAGTAGTAGGGCCTAAAATCAAATTTCTAAACTTGAATTGAACAAATC
. : . : . : . : . : . :
rJMFF008O18- CCCTACGTAGAG
rJMSF012G20- TTGCATTCAGCAACAATTTAAGATGATCCATTCAAAGAGATGGAAGAACCCTACGTAGAG
rJMFF020K16- TTGCATTCAGCAACAATTTAAGATGATCCATTCAAAGAGATGGAAGAACCCTACGTAGAG
____________________________________________________________
consensus TTGCATTCAGCAACAATTTAAGATGATCCATTCAAAGAGATGGAAGAACCCTACGTAGAG
. : . : . : . : . : . :
rJMFF009H24- CTTGTCTTGCAAAATTTGAAGTCCACAATACAAATCATAAATAGGTAGTTC
rJMFF008O18- AAACTCATACTTGTCTTGCAAAATTTGAAGTCCACAATACAAATCATAAATAGGTAGTTC
rJMSF012G20- AAACTCATACTTGTCTTGCAAAATTTGAAGTCCACAATACAAATCATAAATAGGTAGTTC
rJMFF020K16- AAACTCATACTTGTCTTGCAAAATTTGAAGTCCACAATACAAATCATAAATAGGTAGTTC
____________________________________________________________
consensus AAACTCATACTTGTCTTGCAAAATTTGAAGTCCACAATACAAATCATAAATAGGTAGTTC
. : . : . : . : . : . :
rJMFF029I04- TAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
rJMFF009H24- CTCGGATATTGATATATAAAACTAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
rJMFF008O18- CTCGGATATTGATATATAAAACTAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
rJMSF012G20- CTCGGATATTGATATATAAAACTAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
rJMFF020K16- CTCGGATATTGATATATAAAACTAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
____________________________________________________________
consensus CTCGGATATTGATATATAAAACTAAACCTTGTATCCCCTGCTGTTTCTTTTACCCCTAGC
. : . : . : . : . : . :
rJMFF029I04- CCTCTCAAACTTTCTTCCCTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
rJMFF009H24- CCTCTCAAACTTTCTTCCCTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
rJMFF008O18- CCTCTCAAACTTTCTTCCCTTGGNANGCNNATANGGNTTGGTGTGACTGTGAGGAACACC
rJMSF012G20- CCTCTCAAACTTTCTTCCCTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
rJMFF020K16- CCTCTCAAACTTTCTTCCCTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
JMFF029I04+ CTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
____________________________________________________________
consensus CCTCTCAAACTTTCTTCCCTTGGCACGCACATACGGTTTGGTGTGACTGTGAGGAACACC
. : . : . : . : . : . :
rJMFF029I04- AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
rJMFF009H24- AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
rJMSF012G20- AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
rJMFF020K16- AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
JMFF009H24+ GGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
JMFF020K16+ CTCTCAGCAAAAC
JMFF008O18+ CTCTCAGCAAAAC
JMFF029I04+ AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
____________________________________________________________
consensus AGGAGCCGGACCAAAGTGTTTAACTGCTTCACGTGCATTCTTTGGACCTCTCAGCAAAAC
. : . : . : . : . : . :
rJMFF029I04- CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
rJMFF009H24- CGTGTTCTGTCCCAATGGAGCCCTAANAGCCAACTGATCAAATGTCAGGCATTCTCCACC
rJMSF012G20- CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
rJMFF020K16- CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
JMFF009H24+ CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
JMFF020K16+ CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
JMFF008O18+ CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
JMFF029I04+ CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
____________________________________________________________
consensus CGTGTTCTGTCCCAATGGAGCCCTAAGAGCCAACTGATCAAATGTCAGGCATTCTCCACC
. : . : . : . : . : . :
rJMFF029I04- AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
rJMFF009H24- AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCANNGCACAAACTTTCAATGC
rJMSF012G20- AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
rJMFF020K16- AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
JMFF009H24+ AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
JMFF020K16+ AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
JMFF008O18+ AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
JMFF029I04+ AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
____________________________________________________________
consensus AGCTTTTTCAATCCTTGCCCTTGCAGTTTTGGTGAACCTCAGTGCACAAACTTTCAATGC
. : . : . : . : . : . :
rJMFF029I04- TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
rJMFF009H24- TGGGACTTCATA
rJMSF012G20- TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
rJMFF020K16- TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
JMFF009H24+ TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
JMFF020K16+ TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
JMFF008O18+ TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
JMFF029I04+ TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
____________________________________________________________
consensus TGGGACTTCATATGCCCTAACATCATCTGTAATAGTGCCCACTAACACAGCAATTTTGTC
. : . : . : . : . : . :
rJMFF029I04- CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
rJMSF012G20- CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
rJMFF020K16- CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
JMFF009H24+ CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
JMFF020K16+ CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
JMFF008O18+ CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
JMFF029I04+ CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
____________________________________________________________
consensus CTCCTTTCCAGACATGAAAGTGATGAGCCTGGAGAGTGAAACCGGAGGCTTGTTGGTCTT
. : . : . : . : . : . :
rJMFF029I04- GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
rJMSF012G20- GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
rJMFF020K16- GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
JMFF009H24+ GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
JMFF020K16+ GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
JMFF008O18+ GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
JMSF012G20+ CTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
JMFF029I04+ GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
____________________________________________________________
consensus GCTCATGAAGAGACGCTTCAGAATCACAGCATTGAACTTGCTTCCGGTCCTTCGCACCAA
. : . : . : . : . : . :
rJMFF029I04- AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAA
rJMSF012G20- AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
rJMFF020K16- AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
JMFF009H24+ AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
JMFF020K16+ AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
JMFF008O18+ AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
JMSF012G20+ AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
JMFF029I04+ AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
____________________________________________________________
consensus AAACCGGTACAGCTTCACGAGAAGCTTCAAGTAAACATCGTCAGATTTCGGCGCAGTGCG
. : . : . : . : . : . :
rJMSF012G20- CTTCGTCTGCTGGCTCTTACCGCCGGCTTTGAAATCGATACCCATTGNTGAGC
rJMFF020K16- CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGANATCGATACCCATTGTTGAGCTCCG
JMFF009H24+ CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
JMFF020K16+ CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
JMFF008O18+ CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
JMSF012G20+ CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
JMFF029I04+ CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
____________________________________________________________
consensus CTTCGTCTGCTTGCTCTTACCGCCGGCTTTGAGATCGATACCCATTGTTGAGCTCCGCTG
. : . : . : . : . : . :
JMFF009H24+ AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGGCCCTGCTAT
JMFF020K16+ AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGGCCCTGCTAT
JMFF008O18+ AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGCCCCT
JMSF012G20+ AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGGCCCTGCTAT
JMFF029I04+ AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGGCCCTGCTATAT
____________________________________________________________
consensus AAAAGGTTCCGGGGGTCGATGGGGGCGTGCGGCTGAGAGAGAGAATCGGCCCTGCTATAT