| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF021C02 | Sequence | 490 | 005964 (7) | ref|XP_004243516.1| | 5e-56 | PREDICTED: small ubiquitin-related modifier 1 [Solanum lycopersicum] | 483 | 005964 (7) | ref|XP_004243516.1| | 5e-56 | PREDICTED: small ubiquitin-related modifier 1 [Solanum lycopersicum] |
| JMFN037E24 | Sequence | 507 | 005964 (7) | ref|XP_004243516.1| | 6e-56 | PREDICTED: small ubiquitin-related modifier 1 [Solanum lycopersicum] | |||||
| JMSF005H23 | Sequence | 292 | 005964 (7) | emb|CDP11305.1| | 1e-35 | unnamed protein product [Coffea canephora] | 371 | 005964 (7) | ref|XP_010929803.1| | 8e-45 | PREDICTED: small ubiquitin-related modifier 2-like [Elaeis guineensis] |
| JMSF032P01 | Sequence | 527 | 005964 (7) | ref|XP_004243516.1| | 8e-56 | PREDICTED: small ubiquitin-related modifier 1 [Solanum lycopersicum] | 476 | 005964 (7) | ref|XP_004243516.1| | 4e-56 | PREDICTED: small ubiquitin-related modifier 1 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
JMFF021C02+ AGCCAGAAAG
____________________________________________________________
consensus AGCCAGAAAG
. : . : . : . : . : . :
rJMFF021C02- TCTTACAGTACCACAGGCTAAGATTACTACGGAGTAATAGACAACATTACTGGTTTAGAT
rJMSF032P01- ACATTACTGGTTTAGAT
rJMSF005H23- GGTTTAGAT
JMSF032P01+ TCTTACAGTACCACAGGCTAAGATTACTACGGAGTAATAGACAACATTACTGGTTTAGAT
JMFF021C02+ TCTTACAGTACCACAGGCTAAGATTACTACGGAGTAATAGACAACATTACTGGTTTAGAT
____________________________________________________________
consensus TCTTACAGTACCACAGGCTAAGATTACTACGGAGTAATAGACAACATTACTGGTTTAGAT
. : . : . : . : . : . :
rJMFF021C02- CAAGCAAATCAAACAGTATTATCTCACATTACACATCACACAAACTTGAAACATTAACAA
rJMSF032P01- CAAGCAAATCAAACAGTATTATCTCACATTACACATCACACAAACTTGAAACATTAACAA
rJMSF005H23- CAAGCAANTCAAACAGTATTATCNCACATTACACATCACACAAACTTGAAACATTAACAA
JMSF032P01+ CAAGCAAATCAAACAGTATTATCTCACATTACACATCACACAAACTTGAAACATTAACAA
JMFF021C02+ CAAGCAAATCAAACAGTATTATCTCACATTACACATCACACAAACTTGAAACATTAACAA
____________________________________________________________
consensus CAAGCAAATCAAACAGTATTATCTCACATTACACATCACACAAACTTGAAACATTAACAA
. : . : . : . : . : . :
JMFN037E24+ CCTCCAGTTTGGTGCAAC
rJMFF021C02- AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
rJMSF032P01- AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
rJMSF005H23- AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
JMSF032P01+ AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
JMFF021C02+ AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
____________________________________________________________
consensus AAGTTCATCTCCACAAAGATCAATAATGTTCATAGACGCATGCCTCCAGTTTGGTGCAAC
. : . : . : . : . : . :
JMFN037E24+ ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
rJMFF021C02- ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
rJMSF032P01- ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
rJMSF005H23- ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCANGA
JMSF032P01+ ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
JMFF021C02+ ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
____________________________________________________________
consensus ATCGCATCAATTTCATCACCGTCTTCCATCTCCAGCTCATCTGGAGTCTGTTCAGCACGA
. : . : . : . : . : . :
JMFN037E24+ AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
rJMFF021C02- AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
rJMSF032P01- AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
rJMSF005H23- AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
JMSF032P01+ AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
JMSF005H23+ CCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
JMFF021C02+ AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
____________________________________________________________
consensus AGACGACGCCCATCAAATAGGAAAGCTATCGAATTAAAATCCACTGACTGTCTGTCACAG
. : . : . : . : . : . :
JMFN037E24+ TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
rJMFF021C02- TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
rJMSF032P01- TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
rJMSF005H23- TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
JMSF032P01+ TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
JMSF005H23+ TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
JMFF021C02+ TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
____________________________________________________________
consensus TAGGCATTCATGAGCTTCCTTAGTTGGGTGCTTCTCTTAATCCGGAAGAACACTTCATTG
. : . : . : . : . : . :
JMFN037E24+ CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGCGGCGGACTGATCGCCGCCGGGCTTC
rJMFF021C02- CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGCGGCGGACTGATCGCCGCCGGGCTTC
rJMSF032P01- CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGC
rJMSF005H23- CCATCCTGTCCTTTGACTTTGAG
JMSF032P01+ CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGC
JMSF005H23+ CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGC
JMFF021C02+ CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGCGGCGGACTGATCGCCGCCGGGCTTC
____________________________________________________________
consensus CCATCCTGTCCTTTGACTTTGAGGTTGATGTGAGCGGCGGACTGATCGCCGCCGGGCTTC
. : . : . : . : . : . :
JMFN037E24+ TTGTCCTCCTCCGCCGCTTGAGACATTTTTCCCTCTCGCCCTCTTCGTCTAC
rJMFF021C02- TTGTCCTCCTCCGCCGCTTGAGACATTTTTCCCTCTCGCCCTCTTCGTCTACTGCAGTCC
JMFF021C02+ TTGTCCTCCTCCGCCGCTTGAGACATTTTTCCCTCTCGCCCTCTTCGTCTACTGCAGTCC
____________________________________________________________
consensus TTGTCCTCCTCCGCCGCTTGAGACATTTTTCCCTCTCGCCCTCTTCGTCTACTGCAGTCC