Contig 005954:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018O17Sequence532005954 (8)ref|XP_011088208.1|1e-53PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]708005954 (8)ref|XP_011088208.1|2e-99PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]
JMSF013F01Sequence300005954 (8)ref|XP_011088208.1|6e-08PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]711005954 (8)ref|XP_011088208.1|4e-102PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]
JMSF014E15Sequence501005954 (8)ref|XP_011088208.1|3e-48PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]777005954 (8)ref|XP_006647012.1|4e-43PREDICTED: protein TIC 21, chloroplastic-like [Oryza brachyantha]
JMSF016M20Sequence491005954 (8)ref|XP_011088208.1|3e-48PREDICTED: protein TIC 21, chloroplastic [Sesamum indicum]741005954 (8)ref|XP_002285372.1|1e-38PREDICTED: protein TIC 21, chloroplastic [Vitis vinifera] emb|CBI40266.3| unname

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF014E15- GAGGAATTACGGAGCTCTCAAGGGAGAGCTTCCTAGCCA
                      ____________________________________________________________
consensus GAGGAATTACGGAGCTCTCAAGGGAGAGCTTCCTAGCCA
 
. : . : . : . : . : . :
rJMSF016M20- CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
rJMSF014E15- CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
                      ____________________________________________________________
consensus CATTTCTAGTCTCAAATTGCTCTTCTAGTGCAAAGAACACAAATAATCCTTTCTCCACCG
 
. : . : . : . : . : . :
rJMSF016M20- CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
rJMSF014E15- CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
                      ____________________________________________________________
consensus CCCACAGTCGGTGCCGCCGCCACAGCAACGTTTCCCTTCCCCTCCTCGAGCTGTGGCTGC
 
. : . : . : . : . : . :
rJMSF016M20- CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
rJMSF014E15- CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
                      ____________________________________________________________
consensus CGATGTAGCGGCGGCGGAGGTTGCACAATATCCCCGGTGGGCACCTCGCTTGAGAAGAAC
 
. : . : . : . : . : . :
rJMSF016M20- ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
rJMSF014E15- ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
                      ____________________________________________________________
consensus ACCCAGGAGAAGGGTCCTCTGATGGATGGAGATTCCAACAAAGTGCAGTACAGTCCTGTC
 
. : . : . : . : . : . :
rJMSF016M20- CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
rJMSF014E15- CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
rJMFF018O17- ATTAAACGACA
                      ____________________________________________________________
consensus CTTGATAATAAAATGGATGCAACATACAAAGCTAAACCTCACTTATACAATTAAACGACA
 
. : . : . : . : . : . :
rJMSF016M20- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMSF014E15- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMFF018O17- ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
rJMSF013F01- CCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
                      ____________________________________________________________
consensus ATGTTATTCCAGTGTTAACCATCACCAGATTACACTTTTTTAAGTAGAGCTCATGCAACC
 
. : . : . : . : . : . :
rJMSF016M20- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMSF014E15- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMFF018O17- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
rJMSF013F01- TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
                      ____________________________________________________________
consensus TTAGGAACAGGAACAGGAATGCTTTCAGAAGGTGGCGGTAATGTTACTGAGCGCAATAGT
 
. : . : . : . : . : . :
rJMSF016M20- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
rJMSF014E15- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
rJMFF018O17- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACA
rJMSF013F01- TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
                      ____________________________________________________________
consensus TCCAGTGAGAATAACAGCCCAAGAAAGTGTGATAAAATAGTGTTTGCTGATGCCTGTACC
 
. : . : . : . : . : . :
rJMSF016M20- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMSF014E15- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMFF018O17- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
rJMSF013F01- AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
                      ____________________________________________________________
consensus AAAATCACATCCAATGCAAGCACAGGGCTACTACCAGGGGAAATACCCTGATAGTATGGA
 
. : . : . : . : . : . :
rJMSF016M20- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMSF014E15- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMFF018O17- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
rJMSF013F01- ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
                      ____________________________________________________________
consensus ACACTTGAGGTGGTAAGAGCCTTAGCTGACAACCAACCTACCGTGGCTTGCAACCCAACT
 
. : . : . : . : . : . :
rJMSF016M20- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMSF014E15- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMFF018O17- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
rJMSF013F01- ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
                      ____________________________________________________________
consensus ACAGCAGCACCCATTCCCACAAGGTTCAACGCAATCCCATTTTTCAAGCTTTTCACCACA
 
. : . : . : . : . : . :
rJMSF016M20- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTG-TTTCTTTAGCTTCGCAGACAAG
rJMSF014E15- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
rJMFF018O17- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
rJMSF013F01- TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
                      ____________________________________________________________
consensus TCAGCACGAGGAGGAGCCTTTGAAGGCTCACTGGCTGTTTTCTTTAGCTTCGCAGACAAG
 
. : . : . : . : . : . :
rJMSF016M20- CGAAGATAACC
rJMSF014E15- CGAAGATAACCCAAA
rJMFF018O17- CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
rJMSF013F01- CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMSF014E15+ CAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMSF016M20+ CAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
JMFF018O17+ ACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
                      ____________________________________________________________
consensus CGAAGATAACCAAAAGACCAGAAAACAGAAAGAAAAGCTGCAGCAATTCCAGCAGCAGTT
 
. : . : . : . : . : . :
rJMFF018O17- GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
rJMSF013F01- GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMSF014E15+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMSF016M20+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
JMFF018O17+ GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
                      ____________________________________________________________
consensus GAGTAGAATGTAAAGGGTGATGTGATCTTCCCAGTGATAACTACAGAAAAAGAAAGGATC
 
. : . : . : . : . : . :
rJMFF018O17- CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
rJMSF013F01- CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMSF014E15+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMSF016M20+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
JMFF018O17+ CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
                      ____________________________________________________________
consensus CCAGCAGCAACGACTGTGCAAACCAGCTGCCCCCAAAACCCTATACTACCCAATCTCTTG
 
. : . : . : . : . : . :
rJMFF018O17- AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
rJMSF013F01- AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF014E15+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF016M20+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
JMSF013F01+ CCTGAGCGAGCTTCGCTTTTTCCGAT
JMFF018O17+ AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
                      ____________________________________________________________
consensus AAATACCTTGAAGTACTCTCCAATCTCTTTGAGACCTGAGCGAGCTTCGCTTTTTCCGAT
 
. : . : . : . : . : . :
rJMFF018O17- TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGA
rJMSF013F01- TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF014E15+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF016M20+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMSF013F01+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
JMFF018O17+ TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
                      ____________________________________________________________
consensus TCTTCGCTCGGAGAAACGAACGTCGCGGATACAGGACCCGCGGCGGCGAGGGTTCTACTC
 
. : . : . : . : . : . :
rJMSF013F01- CTTGTGTAA
JMSF014E15+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMSF016M20+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMSF013F01+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
JMFF018O17+ CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
                      ____________________________________________________________
consensus CTTGTGTAAATGAGACTTGAGTAAGGTGGAGAGAGAAATCGTTGAGCCTGTGAGGATGTG
 
. : . : . : . : . : . :
JMSF014E15+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMSF016M20+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMSF013F01+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
JMFF018O17+ AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
                      ____________________________________________________________
consensus AGACTGTGGGGTAACGTGATAGGAATCGGGGAAATTAGGGGGCGTAAAATATTAAGCGGA
 
. : . : . : . : . : . :
JMSF014E15+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMSF016M20+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMSF013F01+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
JMFF018O17+ ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
                      ____________________________________________________________
consensus ATGCGTTTCGCCACGACCGGCGAGATCATCGGCAAAGGTGGAGGTGCGCCACCGGAGCGC
 
. : . : . : . : . : . :
JMSF014E15+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCC
JMSF016M20+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGT
JMSF013F01+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGT
JMFF018O17+ GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCCAATTTGAGTTGTCCTTATT
                      ____________________________________________________________
consensus GTAGCCGGCAAAAGTAGTGTCTGCATATCGAGTGATGAGCCAATTTGAGTTGTCCTTATT