Contig 005952:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015I14Sequence575005952 (12)ref|XP_009603662.1|2e-105PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_668005952 (12)ref|XP_009603662.1|2e-77PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFF018M16Sequence568005952 (12)ref|XP_009603662.1|3e-99PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_782005952 (12)ref|XP_009603662.1|7e-138PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFF027C01Sequence571005952 (12)ref|XP_009603662.1|1e-99PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_727005952 (12)ref|XP_009603662.1|2e-124PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFF041G08Sequence636005952 (12)ref|XP_009603662.1|3e-133PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_607005952 (12)ref|XP_009603662.1|3e-86PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFN016K02Sequence612005952 (12)ref|XP_009603662.1|5e-131PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFN040H09Sequence625005952 (12)ref|XP_009603662.1|2e-128PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMFS135D09Sequence598005952 (12)ref|XP_009603662.1|2e-114PREDICTED: proteasome subunit alpha type-2-A [Nicotiana tomentosiformis] ref|XP_
JMSF023H02Sequence621001799 (5)ref|XP_009599717.1|1e-58PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxogl254005952 (12)ref|XP_006377038.1|5e-48hypothetical protein POPTR_0012s12320g [Populus trichocarpa] gb|ERP54835.1| hypo

Alignment

This contig is upended


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rJMFF041G08-                                                  CTACAAAGCCATAAATCAAC
                      ____________________________________________________________
consensus                                                     CTACAAAGCCATAAATCAAC
 
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rJMFF041G08-          CAGAACTGAAGTAAAATCAGGATTTAAGTTACACATGAACGCCAGAGCAGTCTAGATTTG
rJMFF027C01-               CTGAAGTAAAATCAGGATTTAAGTTACACATGAACGCCAGAGCAGTCTAGATTTG
rJMFF015I14-               CTGAAGTAAAATCAGGATTTAAGTTACACATGAACGCCAGAGCAGTCTAGATTTG
rJMFF018M16-               CTGAAGTAAAATCAGGATTTAAGTTACACATGAACGCCAGAGCAGTCTAGATTTG
                      ____________________________________________________________
consensus             CAGAACTGAAGTAAAATCAGGATTTAAGTTACACATGAACGCCAGAGCAGTCTAGATTTG
 
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rJMFF041G08-          GCAGTTCAAAAGTTTGAATAAACAACAAAGTCTGATGATAGATAGTCGCGTTGCACAAAA
rJMFF027C01-          GCAGTTCAAAAGTTTGAATAAACAACAAAGTCTGATGATAGATAGTCGCGTTGCACAAAA
rJMFF015I14-          GCAGTTCAAAAGTTTGAATAAACAACAAAGTCTGATGATAGATAGTCGCGTTGCACAAAA
rJMFF018M16-          GCAGTTCAAAAGTTTGAATAAACAACAAAGTCTGATGATAGATAGTCGCGTTGCACAAAA
                      ____________________________________________________________
consensus             GCAGTTCAAAAGTTTGAATAAACAACAAAGTCTGATGATAGATAGTCGCGTTGCACAAAA
 
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rJMFF041G08-          CAAATCTTTCTTTGTTGTTTCCTAACATAAAGTGAACATTTTCCACGCACCCTCAAGAAA
rJMFF027C01-          CAAATCTTTCTTTGTTGTTTCCTAACATAAAGTGAACATTTTCCACGCACCCTCAAGAAA
rJMFF015I14-          CAAATCTTTCTTTGTTGTTTCCTAACATAAAGTGAACATTTTCCACGCACCCTCAAGAAA
rJMFF018M16-          CAAATCTTTCTTTGTTGTTTCCTAACATAAAGTGAACATTTTCCACGCACCCTCAAGAAA
                      ____________________________________________________________
consensus             CAAATCTTTCTTTGTTGTTTCCTAACATAAAGTGAACATTTTCCACGCACCCTCAAGAAA
 
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rJMFF041G08-          AACTTTACTACTCCACTTCCTGTAGGTAGTCATCAATTTCAGCAGGCGTAAGGACTCTGA
rJMFF027C01-          AACTTTACTACTCCACTTCCTGTAGGTAGTCATCAATTTCAGCAGGCGTAAGGACTCTGA
rJMFF015I14-          AACTTTACTACTCCACTTCCTGTAGGTAGTCATCAATTTCAGCAGGCGTAAGGACTCTGA
rJMSF023H02-                                                        CGTANGGACTCTGA
rJMFF018M16-          AACTTTACTACTCCACTTCCTGTAGGTAGTCATCAATTTCAGCAGGCGTAAGGACTCTGA
                      ____________________________________________________________
consensus             AACTTTACTACTCCACTTCCTGTAGGTAGTCATCAATTTCAGCAGGCGTAAGGACTCTGA
 
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rJMFF041G08-          ACACTTAGTCAGCACCAATTATGCCAATCTCAATGTTTTTACCAGAAATTTGCCCTTCAA
rJMFF027C01-          ACACTTTGTCAGCACCAATTATGCCAATCTCAATGTTTTTACCAGAAATTTGCCCTTCAA
rJMFF015I14-          ACACTTTGTCAGCACCAATTATGCCAATCTCAATGTTTTTACCAGAAATTTGCCCTTCAA
rJMSF023H02-          ACACTTTGTCAGCACCAATTATGCCAATCTCANTGTTTTTACCAGAAATTTGCCCTTCAA
rJMFF018M16-          ACACTTTGTCAGCACCAATTATGCCAATCTCAATGTTTTTACCAGAAATTTGCCCTTCAA
                      ____________________________________________________________
consensus             ACACTTTGTCAGCACCAATTATGCCAATCTCAATGTTTTTACCAGAAATTTGCCCTTCAA
 
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rJMFF041G08-          ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
rJMFF027C01-          ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
rJMFF015I14-          ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
rJMSF023H02-          ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGNACAGCATCATCNAGTTCCATATCNTCNG
rJMFF018M16-          ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
JMFN016K02+                                             AGCATCATCAAGTTCCATATCTTCTG
JMFF041G08+                                TAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
JMFN040H09+                                                     CAAGTTCCATATCTTCTG
                      ____________________________________________________________
consensus             ATCCCTCCTTCAGTGTCAGAATAGCAGTGTGTACAGCATCATCAAGTTCCATATCTTCTG
 
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rJMFF041G08-          TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
rJMFF027C01-          TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
rJMFF015I14-          TATACCTCTTCTCAAGAA--GTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
rJMSF023H02-          NATACCTCTTCTCAAGANATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGANGCCT
rJMFF018M16-          TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
JMFN016K02+           TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
JMFF041G08+           TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCNCCATGGCTGAAGCCT
JMFN040H09+           TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
JMFS135D09+                                               CATTCTTCCCCATGGCTGAAGCCT
                      ____________________________________________________________
consensus             TATACCTCTTCTCAAGAAATGTCTTCGCATTAGACACATTCTTCCCCATGGCTGAAGCCT
 
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rJMFF041G08-          TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
rJMFF027C01-          TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
rJMFF015I14-          TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
rJMSF023H02-          TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
rJMFF018M16-          TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFN016K02+           TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFF041G08+           TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFN040H09+           TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFF015I14+                   AAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFS135D09+           TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFF027C01+                                       CACCTGATACAGCTGGGGACCCTTGTCATCAA
JMFF018M16+                                          CTGATACAGCTGGGGACCCTTGTCATCAA
                      ____________________________________________________________
consensus             TCCAGGAGAAGTATGAACCTGAAGGATCCACCTGATACAGCTGGGGACCCTTGTCATCAA
 
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rJMFF041G08-          ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
rJMFF027C01-          ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
rJMFF015I14-          ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
rJMFF018M16-          ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFN016K02+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFF041G08+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFN040H09+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFF015I14+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFS135D09+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFF027C01+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
JMFF018M16+           ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
                      ____________________________________________________________
consensus             ACCCAGCAACCAAGAGAGAAACACCAAATGGCCTTACACCACCTGATTGAGTGAATTCCT
 
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rJMFF041G08-          GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGT            
rJMFF027C01-          GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
rJMFF015I14-          GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACAGGGGATTGGTTCTTTATAGAGG
rJMFF018M16-          GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFN016K02+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFF041G08+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFN040H09+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFF015I14+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFS135D09+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFF027C01+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
JMFF018M16+           GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
                      ____________________________________________________________
consensus             GCATCACTGCTGCGGTTTCCCTCACAAGTTGCGTGACA-GGGATTGGTTCTTTATAGAGG
 
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rJMFF027C01-          CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
rJMFF015I14-          CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTANAATCAGGTCCC
rJMFF018M16-          CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFN016K02+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFF041G08+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFN040H09+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFF015I14+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFS135D09+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFF027C01+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
JMFF018M16+           CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
                      ____________________________________________________________
consensus             CGGTGATATTGTTCGGCTTGTTTCCTACTTTTCCGAACCAAAACTCTAGAATCAGGTCCC
 
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rJMFF027C01-          ATGCCACTGTATACNACTCCNATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
rJMFF015I14-          ATGCCACTGTATA                                               
rJMFF018M16-          ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFN016K02+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFF041G08+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFN040H09+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFF015I14+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFS135D09+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFF027C01+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
JMFF018M16+           ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
                      ____________________________________________________________
consensus             ATGCCACTGTATACAACTCCAATATTTGGTGTCAAAATCTGAATCTTTTGCACAGAAGCT
 
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rJMFF027C01-          TCATCAACCAAGA                                               
rJMFF018M16-          TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFN016K02+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFF041G08+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFN040H09+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFF015I14+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFS135D09+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFF027C01+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
JMFF018M16+           TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
                      ____________________________________________________________
consensus             TCATCAACCAAGATGGATGGTAGTTTCTTCTCAGTTGCAATAACAACACCATTAGAAGCT
 
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rJMFF018M16-          TTTATC                                                      
JMFN016K02+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFF041G08+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFN040H09+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFF015I14+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFS135D09+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFF027C01+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
JMFF018M16+           TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
                      ____________________________________________________________
consensus             TTTATCCCTAAAGATGTTTGCCCGGAACCAACAGCCGTTAAGGCATGTTCAATCTGAACT
 
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JMFN016K02+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFF041G08+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFN040H09+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFF015I14+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFS135D09+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFF027C01+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
JMFF018M16+           AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
                      ____________________________________________________________
consensus             AGTTTTCCAGAAGGGCTGAACGTGGTAAGGGAAAATGAGTATTGACTGTCTCCCATCAGA
 
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JMFN016K02+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAA             
JMFF041G08+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCAC  
JMFN040H09+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
JMFF015I14+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
JMFS135D09+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
JMFF027C01+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
JMFF018M16+           TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
                      ____________________________________________________________
consensus             TATTGTAAAGCTCTAGTAAATGCTCTGGGCAATGTCGAGGCAGCGAAGAATTCTTCACGG
 
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JMFN040H09+           AAGCTTGA                                                    
JMFF015I14+           AAGCTTGAGAATAGGGATACTTCT                                    
JMFS135D09+           AAGCTTGAGAATAGGGATACTTCTAGCTTTAGTTC                         
JMFF027C01+           AAGCTTGAGAATAGGGATACTTCTAGCTTTAGTTCGACTTGGGGAGAAAGAAATAAAAGG
JMFF018M16+           AAGCTTGAGAATAGGGATACTTCTAGCTTTAGTTCGACTTGGGGAGAAAGAAATAAAAGG
                      ____________________________________________________________
consensus             AAGCTTGAGAATAGGGATACTTCTAGCTTTAGTTCGACTTGGGGAGAAAGAAATAAAAGG