| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017O02 | Sequence | 592 | 005949 (4) | ref|XP_009787744.1| | 8e-55 | PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris] | 747 | 023334 | ref|XP_006339511.1| | 2e-36 | PREDICTED: synaptotagmin-4-like isoform X1 [Solanum tuberosum] ref|XP_006339512. |
| JMFF042N22 | Sequence | 661 | 005949 (4) | ref|XP_009787744.1| | 2e-78 | PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris] | |||||
| JMSF033K23 | Sequence | 658 | 005949 (4) | ref|XP_009787744.1| | 1e-69 | PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris] | 670 | 003008 (2) | ref|XP_006339511.1| | 2e-26 | PREDICTED: synaptotagmin-4-like isoform X1 [Solanum tuberosum] ref|XP_006339512. |
| JMSF049F24 | Sequence | 630 | 005949 (4) | ref|XP_009787744.1| | 1e-63 | PREDICTED: synaptotagmin-5-like isoform X1 [Nicotiana sylvestris] | 727 | 003008 (2) | ref|XP_006339511.1| | 7e-31 | PREDICTED: synaptotagmin-4-like isoform X1 [Solanum tuberosum] ref|XP_006339512. |
This contig is upended
. : . : . : . : . : . :
JMFF042N22+ G
____________________________________________________________
consensus G
. : . : . : . : . : . :
JMFF042N22+ AAGTCATATCCATGTAATTGACCTTTTTGAGGCTCTGAACACGAATACCTTCAATCTTNG
JMSF033K23+ G
____________________________________________________________
consensus AAGTCATATCCATGTAATTGACCTTTTTGAGGCTCTGAACACGAATACCTTCAATCTTNG
. : . : . : . : . : . :
JMFF042N22+ GCGCCACAGTTCCCAGGGACAGTTTGCTGAACTNTAACGAATTAATTCCGGTAGGTCGAT
JMSF033K23+ GCGCCACAGTTCCCAGGGACAGTTTGCTGAACTTTAACGAATTAATTCCGGTAGGTCGAT
____________________________________________________________
consensus GCGCCACAGTTCCCAGGGACAGTTTGCTGAACTTTAACGAATTAATTCCGGTAGGTCGAT
. : . : . : . : . : . :
JMFF042N22+ ATTCTTCTAACAGAGGTTCAACAGACATTCTAATAATAGCCTCTGCTGCTTCAGCAACAA
JMSF033K23+ ATTCTTCTAACAGAGGTTCAACAGACATTCTAATAATAGCCTCTGCTGCTTCAGCAACAA
JMFF017O02+ AACAGAGGTTCAACAGACATTCTAATAATAGCCTCTGCTGCTTCAGCAACAA
____________________________________________________________
consensus ATTCTTCTAACAGAGGTTCAACAGACATTCTAATAATAGCCTCTGCTGCTTCAGCAACAA
. : . : . : . : . : . :
JMFF042N22+ ATGGCCAGAGCTTGCTCAATTGTTTGTTCAACCATTTCACCTGCTCATAAACGGGGAAAG
JMSF033K23+ ATGGCCAGAGCTTGCTCAATTGTTTGTTCAACCATTTCACCTGCTCATAAACGGGGAAAG
JMFF017O02+ ATGGCCAGAGCTTGCTCAATTGTTTGTTCAACCATTTCACCTGCTCATAAACGGGGAAAG
____________________________________________________________
consensus ATGGCCAGAGCTTGCTCAATTGTTTGTTCAACCATTTCACCTGCTCATAAACGGGGAAAG
. : . : . : . : . : . :
JMFF042N22+ ATATCCATTCAGGAAAATTATCACCACATATTTTCTTCAAATCATCCCTGTCAAGGCATC
JMSF033K23+ ATATCCATTCAGGAAAATTATCACCACATATTTTCTTCAAATCATCCCTGTCAAGGCATC
JMFF017O02+ ATATCCATTCAGGAAAATTATCACCACATATTTTCTTCAAATCATCCCTGTCAAGGCATC
____________________________________________________________
consensus ATATCCATTCAGGAAAATTATCACCACATATTTTCTTCAAATCATCCCTGTCAAGGCATC
. : . : . : . : . : . :
JMFF042N22+ CCATTAGTTTTACATCAACCGCTTTGGCCCTCCGCTTGCTGCTCCGATATCTCATCATAT
JMSF033K23+ CCATTAGTTTTACATCAACCGCTTTGGCCCTCCGCTTGCTGCTCCGATATCTCATCATAT
JMSF049F24+ ATTAGTTTTACATCAACCGCTTTGGCCCTCCGCTTGCTGCTCCGATATCTCATCATAT
JMFF017O02+ CCATTAGTTTTACATCAACCGCTTTGGCCCTCCGCTTGCTGCTCCGATATCTCATCATAT
____________________________________________________________
consensus CCATTAGTTTTACATCAACCGCTTTGGCCCTCCGCTTGCTGCTCCGATATCTCATCATAT
. : . : . : . : . : . :
JMFF042N22+ GTCGCCAGCCCGCCATCAAAGCAATTCCAAACAGAATCCCCATCAGCATCCCCGAAATCA
JMSF033K23+ GTCGCCAGCCCGCCATCAAAGCAATTCCAAACAGAATCCCCATCAGCATCCCCGAAATCA
JMSF049F24+ GTCGCCAGCCCGCCATCAAAGCAATTCCAAACAGAATCCCCATCAGCATCCCCGAAATCA
JMFF017O02+ GTCGCCAGCCCGCCATCAAAGCAATTCCAAACAGAATCCCCATCAGCATCCCCGAAATCA
____________________________________________________________
consensus GTCGCCAGCCCGCCATCAAAGCAATTCCAAACAGAATCCCCATCAGCATCCCCGAAATCA
. : . : . : . : . : . :
JMFF042N22+ GCCCCATCTTCGATGATCCAGCAAAAAATTTCCTTATTCCTGCTCCGAAAAAAAGAATTC
JMSF033K23+ GCCCCATCTTCGATGATCCAGCAAAAAATTTCCTTATTCCTGCTCCGAAAAAAAGAATTC
JMSF049F24+ GCCCCATCTTCGATGATCCAGCAAAAAATTTCCTTATTCCTGCTCCGAAAAAAAGAATTC
JMFF017O02+ GCCCCATCTTCGATGATCCAGCAAAAAATTTCCTTATTCCTGCTCCGAAAAAAAGAATTC
____________________________________________________________
consensus GCCCCATCTTCGATGATCCAGCAAAAAATTTCCTTATTCCTGCTCCGAAAAAAAGAATTC
. : . : . : . : . : . :
JMFF042N22+ CTGCAACTGCCTTCAACTGACCCAGTAGCTCCTTTCTCTCACACCAGGAAGATATAGCTT
JMSF033K23+ CTGCAACTGCCTTCAACTGACCCAGTAGCTCCTTTCTCTCACACCAGGAAGATATAGCTT
JMSF049F24+ CTGCAACTGCCTTCAACTGACCCAGTAGCTCCTTTCTCTCACACCAGGAAGATATAGCTT
JMFF017O02+ CTGCAACTGCCTTCAACTGACCCAGTAGCTCCTTTCTCTCACACCAGGAAGATATAGCTT
____________________________________________________________
consensus CTGCAACTGCCTTCAACTGACCCAGTAGCTCCTTTCTCTCACACCAGGAAGATATAGCTT
. : . : . : . : . : . :
JMFF042N22+ TCTCTCTCTGTAATTATAGATTGGGTTGCTTAGCATTCCCTCCAGAGATCCTTTTTGGAC
JMSF033K23+ TCTCTCTCTGTAATTATAGATTGGGTTGCTTAGCATTCCCTCCAGAGATCCTTTTTGGAC
JMSF049F24+ TCTCTCTCTGTAATTATAGATTGGGTTGCTTAGCATTCCCTCCAGAGATCCTTTTTGGAC
JMFF017O02+ TCTCTCTCTGTAATTATAGATTGGGTTGCTTAGCATTCCCTCCAGAGATCCTTTTTGGAC
____________________________________________________________
consensus TCTCTCTCTGTAATTATAGATTGGGTTGCTTAGCATTCCCTCCAGAGATCCTTTTTGGAC
. : . : . : . : . : . :
JMFF042N22+ GTTAAAATACAAGCACAATAAAAATAGAAATAGCAGCACGGCAGTAACAAAAGATTAGCT
JMSF033K23+ GTTAAAATACAAGCACAATAAAAATAGAAATAGCAGCACGGCAGTAACAAAAGATTAGCT
JMSF049F24+ GTTAAAATACAAGCACAATAAAAATAGAAATAGCAGCACGGCAGTAACAAAAGATTAGCT
JMFF017O02+ GTTAAAATACAAGCACAATAAAAATAGAAATAGCAGCACGGCAGTAACAAAAGATTAGCT
____________________________________________________________
consensus GTTAAAATACAAGCACAATAAAAATAGAAATAGCAGCACGGCAGTAACAAAAGATTAGCT
. : . : . : . : . : . :
JMSF033K23+ GGGTGTCATTAATGGGGAACGTTGCACTTGAACCTATTACCTACGCCATCCCCTCT
JMSF049F24+ GGGTGTCATTAATGGGGAACGTTGCACTTGAACCTATTACCTACGCCATCCCCTCT
JMFF017O02+ GGGTGTCATTAATGGGGAACGTTGCACTTGAACCTATTACCTACGCCATCCCCTCTACCT
____________________________________________________________
consensus GGGTGTCATTAATGGGGAACGTTGCACTTGAACCTATTACCTACGCCATCCCCTCTACCT