Contig 005936:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001A04Sequence383005936 (6)
JMFF015B18Sequence534005936 (6)ref|XP_009604024.1|116PREDICTED: uncharacterized protein LOC104098884 [Nicotiana tomentosiformis]595005936 (6)ref|XP_006344000.1|84.0PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]
JMFF016A05Sequence403005936 (6)ref|XP_009604024.1|104PREDICTED: uncharacterized protein LOC104098884 [Nicotiana tomentosiformis]
JMFN029N19Sequence628005936 (6)ref|XP_006344000.1|140PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]
JMFS002G06Sequence543005936 (6)ref|XP_006344000.1|129PREDICTED: uncharacterized protein LOC102605156 [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP001A04+ CACTCTGCAGA
                      ____________________________________________________________
consensus CACTCTGCAGA
 
. : . : . : . : . : . :
rJMCP001A04+ TTTGCTTTTCCTGAAGTTGAAGCCAGACCAACAACTGGTTAAAAAGCCTTCCCTCCTGTG
rJMFF015B18- CAGACCAACNACTGGTTAAAAAGCCTTTCCTCCTGTG
                      ____________________________________________________________
consensus TTTGCTTTTCCTGAAGTTGAAGCCAGACCAACAACTGGTTAAAAAGCCTTTCCTCCTGTG
 
. : . : . : . : . : . :
rJMCP001A04+ GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
rJMFF015B18- GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
                      ____________________________________________________________
consensus GGGTGTGGTGGTGCTATTGCTGCTACTTGTGGTGCTGCCATCACTGCTGCCACTGATATT
 
. : . : . : . : . : . :
rJMCP001A04+ GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
rJMFF015B18- GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
                      ____________________________________________________________
consensus GCTGCTATCACTCTCTCTGGAACCCCATGATCTCTTCTTCTTCCACCACTCTTTATCCAC
 
. : . : . : . : . : . :
rJMCP001A04+ ACTACTCTTGCTGGATTTCTCAGATCCCTCTACTGCTGGCTTAGGAGAAACCTTTGCCAA
rJMFF015B18- ACTACTCTTGCTGGATTTCTCANATCCCTCTACTGCTGGCTTAAGAGAAACCTTTGCCAA
JMFN029N19+ TTGCCAA
                      ____________________________________________________________
consensus ACTACTCTTGCTGGATTTCTCAGATCCCTCTACTGCTGGCTTAGGAGAAACCTTTGCCAA
 
. : . : . : . : . : . :
rJMCP001A04+ TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
rJMFF015B18- TGTCTTACTCCCTGAANATGAAGATGGGTTCTTCTTCTTGTTTGATCCCCCCANACCCAG
JMFN029N19+ TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
                      ____________________________________________________________
consensus TGTCTTACTCCCTGAAGATGAAGATGGGTTCTTTTTCTTGTTTGATCCCCCCAGACCCAG
 
. : . : . : . : . : . :
rJMCP001A04+ TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
rJMFF015B18- NGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
JMFN029N19+ TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
JMFS002G06+ TTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
                      ____________________________________________________________
consensus TGAGATCGGAAACACCAACTTCAGAAACATCCCTCTGTTCTCCATGCTCCCACTTCTTCC
 
. : . : . : . : . : . :
rJMCP001A04+ CATCTTCCCTG
rJMFF015B18- CATCTTCCCTGNACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
JMFN029N19+ CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
JMFS002G06+ CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTNTGCACCACCACC
JMFF015B18+ CCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
                      ____________________________________________________________
consensus CATCTTCCCTGTACTCTTCTTGATACTCTCTTGCCTCTTCACTCTCTCTGCACCACCACC
 
. : . : . : . : . : . :
rJMFF015B18- ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFN029N19+ ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFS002G06+ ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
JMFF016A05+ CTGTTCCAC
JMFF015B18+ ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
                      ____________________________________________________________
consensus ATAGTCTTTCATCAAGCATTCTTCTTGGGTTTCTACTACTACTCTAGCAGGCTGTTCCAC
 
. : . : . : . : . : . :
rJMFF015B18- AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFN029N19+ AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFS002G06+ AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFF016A05+ AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
JMFF015B18+ AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
                      ____________________________________________________________
consensus AAGATCCTTCAAGGATAACTCGTAGCAAGACTCCGGCATGTTCTTCACCATCTCCATCAG
 
. : . : . : . : . : . :
rJMFF015B18- CTCCCACTGCCCTCTAGNAATGGCCTCANCTCTGCTATGGTGGTGGCGAAGGCGGGCATG
JMFN029N19+ CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFS002G06+ CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFF016A05+ CTCCCACTGCCCTNTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
JMFF015B18+ CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
                      ____________________________________________________________
consensus CTCCCACTGCCCTCTAGCAATGGCCTCAGCTCTGCTATGGTGGTGGCGAAGGCGGGCAGG
 
. : . : . : . : . : . :
rJMFF015B18- ACTGTTCTGCCGCCACAA
JMFN029N19+ ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFS002G06+ ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFF016A05+ ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
JMFF015B18+ ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
                      ____________________________________________________________
consensus ACTGTTCTGCCGCCACAAGGGAGGTGAAGAAACACCAGACTGGTGGTCATCATCAGGCCT
 
. : . : . : . : . : . :
JMFN029N19+ GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFS002G06+ GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFF016A05+ GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
JMFF015B18+ GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
                      ____________________________________________________________
consensus GAATTGGATCCCTCTGTAGTGGTGGTGTTCATGGTTCTTTGATGGGTGATTGGCGTTGGT
 
. : . : . : . : . : . :
JMFN029N19+ GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFS002G06+ GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFF016A05+ GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
JMFF015B18+ GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
                      ____________________________________________________________
consensus GACAAAATTCAGGGGCTCCCACCCATCAAAGCTGTAATCATGGTCTCTGCTGGTGACTGG
 
. : . : . : . : . : . :
JMFN029N19+ ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFS002G06+ ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFF016A05+ ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
JMFF015B18+ ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
                      ____________________________________________________________
consensus ATCAAGAATATGGACATGATCGTTTGGGGGAGAAAGCATGGTTTTTGGGAGGAGATTGGG
 
. : . : . : . : . : . :
JMFN029N19+ GAAATGGTTGGGTTGT
JMFS002G06+ GAAATGGTTGGGTTGT
JMFF016A05+ GAAATGGTTGAGTTGTNTTGNGTTCTGTTGGTGT
JMFF015B18+ GAAATGGTTGAGTTGTGTTGTGTTGTGTTGGTGTGAGAAGATGAGAGGAGGAAGAGAATC
                      ____________________________________________________________
consensus GAAATGGTTGGGTTGTGTTGTGTTGTGTTGGTGTGAGAAGATGAGAGGAGGAAGAGAATC