Contig 005924:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001J08Sequence611005924 (7)567005924 (7)
JMFF012D21Sequence525005924 (7)742005924 (7)
JMFF027N07Sequence613005924 (7)692005924 (7)
JMFN020O23Sequence436005924 (7)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF012D21- ACTTATTAT
                      ____________________________________________________________
consensus ACTTATTAT
 
. : . : . : . : . : . :
rJMFF027N07- CTTGTATCCAATCTA
rJMFF001J08- CTTGTATCCAATCTA
rJMFF012D21- ATTATTAAGGATTTGAGTGCGGACAAATACATATTACCATTAATCCTTGTATCCAATCTA
                      ____________________________________________________________
consensus ATTATTAAGGATTTGAGTGCGGACAAATACATATTACCATTAATCCTTGTATCCAATCTA
 
. : . : . : . : . : . :
rJMFF027N07- CTAGTCATGGATATTATTTTGGTAAGAAAATTGGTAAAACTCCTTAAATTGAGGTAGCCA
JMFF001J08+ TCCTTAAATTGAGGTAGCCA
rJMFF001J08- CTAGTCATGGATATTATTTTGGTAAGAAAATTGGTAAAACTCCTTAAATTGAGGTAGCCA
rJMFF012D21- CTAGTCATGGATATTATTTTGGTAAGAAAATTGGTAAAACTCCTTAAATTGAGGTAGCCA
JMFF027N07+ ATTGAGGTAGCCA
                      ____________________________________________________________
consensus CTAGTCATGGATATTATTTTGGTAAGAAAATTGGTAAAACTCCTTAAATTGAGGTAGCCA
 
. : . : . : . : . : . :
rJMFF027N07- AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
JMFF001J08+ AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
rJMFF001J08- AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
rJMFF012D21- AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
JMFF027N07+ AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
                      ____________________________________________________________
consensus AAATGGAGACATTTAGCAGCCAACCCATGTTGATGGGATGAAGGTAGGTGTCATGGTTAC
 
. : . : . : . : . : . :
rJMFF027N07- ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
JMFF001J08+ ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
rJMFF001J08- ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
rJMFF012D21- ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
JMFF027N07+ ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
JMFF012D21+ ATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
                      ____________________________________________________________
consensus ACTCATCTGCTTTTTATGTCGTCGTCCTTGTCATTGTCATAAATAATATCTTCATCACTT
 
. : . : . : . : . : . :
rJMFF027N07- CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
JMFN020O23+ TCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
JMFF001J08+ CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
rJMFF001J08- CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
rJMFF012D21- CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
JMFF027N07+ CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
JMFF012D21+ NTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
                      ____________________________________________________________
consensus CTACGAACCAAATCTTCATCACTATTACCAATGCCATCTTCATCACTGTGACCAACCAAA
 
. : . : . : . : . : . :
rJMFF027N07- TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
JMFN020O23+ TCTT-ATCATCACCGCCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
JMFF001J08+ TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
rJMFF001J08- TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
rJMFF012D21- TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
JMFF027N07+ TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
JMFF012D21+ TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
                      ____________________________________________________________
consensus TCTTCATCATCACCACCGCCATCTTCATGACTGTTACCAACCAAATCTTCATCACCGCCG
 
. : . : . : . : . : . :
rJMFF027N07- CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
JMFN020O23+ CCATCTTTATGACTGTTACCAACCAAATGTTCATCATCACCACCGCCATCTTCATGACTG
JMFF001J08+ CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
rJMFF001J08- CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
rJMFF012D21- CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
JMFF027N07+ CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
JMFF012D21+ CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
                      ____________________________________________________________
consensus CCATCTTTATGACTGTTACCAACCAAATCTTCATCATCACCACCGCCATCTTCATGACTG
 
. : . : . : . : . : . :
rJMFF027N07- TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
JMFN020O23+ TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
JMFF001J08+ TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
rJMFF001J08- TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
rJMFF012D21- TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
JMFF027N07+ TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
JMFF012D21+ TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
                      ____________________________________________________________
consensus TTACCAACCAAATCTTCATCACCGCCGCCATCTTCATCACTATTACCAACCATATCTTCA
 
. : . : . : . : . : . :
rJMFF027N07- TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
JMFN020O23+ TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
JMFF001J08+ TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
rJMFF001J08- TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
rJMFF012D21- TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
JMFF027N07+ TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
JMFF012D21+ TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
                      ____________________________________________________________
consensus TTTTTTACTTTCATGTTTCCTTCCCCACCCTTTAGGGGGGAATGTAAAGGCTCATCACTT
 
. : . : . : . : . : . :
rJMFF027N07- TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
JMFN020O23+ TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
JMFF001J08+ TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
rJMFF001J08- TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTG
rJMFF012D21- TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
JMFF027N07+ TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
JMFF012D21+ TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
                      ____________________________________________________________
consensus TTAGTATCAACAACTCCTTCACCCAAACTACTTAATGTGGGAGAGGGAAGGGGTCGACTT
 
. : . : . : . : . : . :
rJMFF027N07- AGGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
JMFN020O23+ AGGGCTGAGCTAATAAGGGATGATAGAATTAGTAGAAGCATGAAAGCCGCCAT-GAAACA
JMFF001J08+ AGGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
rJMFF012D21- ANGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
JMFF027N07+ AGGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
JMFF012D21+ AGGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
                      ____________________________________________________________
consensus AGGGCTGAGCTAATAAGGGATGATGAAATTAGTAGAAGCATGAAAGCCGCCATGGAAACA
 
. : . : . : . : . : . :
rJMFF027N07- CTTTTTGAAGATGCCATAATGTTC
JMFN020O23+ CTTTTTGAAGATGCCATAATGTTCAGTAGTA
JMFF001J08+ CTTTTTGAAGATGCCATAATGTTCAGTAGTACTCAGCTAGCTAGTTGAATT
rJMFF012D21- CTTTTTGAAGATGCCATAATGTTCAGTAGTACTCAGCTAGCTAGTTGAATTGAAGAT
JMFF027N07+ CTTTTTGAAGATGCCATAATGTTCAGTAGTACTCAGCTAGCTAGTTGAATTGAAGATGA
JMFF012D21+ CTTTTTGAAGATGCCATAATGTTCAGTAGTACTCAGCTAGCTAGTTGAATTGAAGATGAT
                      ____________________________________________________________
consensus CTTTTTGAAGATGCCATAATGTTCAGTAGTACTCAGCTAGCTAGTTGAATTGAAGATGAT