Contig 005912:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009I14Sequence572005912 (2)ref|XP_011006128.1|4e-26PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like [Populu697012246 (2)
JMSF016O24Sequence251005912 (2)723012246 (2)gb|KJB06939.1|6e-04hypothetical protein B456_001G226200 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF009I14+ GTGTCTCCAACCACATTGTGCAGATAGTGTGT
                      ____________________________________________________________
consensus GTGTCTCCAACCACATTGTGCAGATAGTGTGT
 
. : . : . : . : . : . :
JMFF009I14+ ATCTGAAATTGATAGTGGAAGTTGCCTCTTGCAGAAATACTCATGATGAGGCAACAACTT
                      ____________________________________________________________
consensus ATCTGAAATTGATAGTGGAAGTTGCCTCTTGCAGAAATACTCATGATGAGGCAACAACTT
 
. : . : . : . : . : . :
JMFF009I14+ GAACTGACTAATAAGATCAACAGCACCTGTAAGTTCTCTGGGACCTCTTCCAAACTTTCT
                      ____________________________________________________________
consensus GAACTGACTAATAAGATCAACAGCACCTGTAAGTTCTCTGGGACCTCTTCCAAACTTTCT
 
. : . : . : . : . : . :
JMFF009I14+ GTTTTCTGGATCCATCTATTTGCATCAAATATGTCAGCAGAACACAATTGCCAGGTATTG
                      ____________________________________________________________
consensus GTTTTCTGGATCCATCTATTTGCATCAAATATGTCAGCAGAACACAATTGCCAGGTATTG
 
. : . : . : . : . : . :
JMFF009I14+ TATTGATCGATACAAACAGCAAAAGTTGAGTTTATCCAAGCAATGATATCAATCTCAGGA
                      ____________________________________________________________
consensus TATTGATCGATACAAACAGCAAAAGTTGAGTTTATCCAAGCAATGATATCAATCTCAGGA
 
. : . : . : . : . : . :
JMSF016O24+ CAGTGAGAGATCCGCCGGGGACAATTCGC
JMFF009I14+ TGTAGTGGAAGAACACACCACCATTCGATTGCAGTGAGAGATCCGCCGGGGACAATTCGC
                      ____________________________________________________________
consensus TGTAGTGGAAGAACACACCACCATTCGATTGCAGTGAGAGATCCGCCGGGGACAATTCGC
 
. : . : . : . : . : . :
JMSF016O24+ CTCCGCGAAACACGGAATTCCTCTCCCTATCTCCCTCCCGCCCGCTCCGGTGTCGCTCCA
JMFF009I14+ CTCCGCGAAACACGGAATTCCTCTCCCTATCTCCCTCCCGCCCGCTCCGGTGTCGCTCCA
                      ____________________________________________________________
consensus CTCCGCGAAACACGGAATTCCTCTCCCTATCTCCCTCCCGCCCGCTCCGGTGTCGCTCCA
 
. : . : . : . : . : . :
JMSF016O24+ ATCCAATTGAATACGTTCTCGAAGCAGCGAATAAAGTGCGGAGGAGAATTCGAAATAACT
JMFF009I14+ ATCCAATTGAATACGTTCTCGAAGCAGCGAATAAAGTGCGGAGGAGAATTCGAAATAACT
                      ____________________________________________________________
consensus ATCCAATTGAATACGTTCTCGAAGCAGCGAATAAAGTGCGGAGGAGAATTCGAAATAACT
 
. : . : . : . : . : . :
JMSF016O24+ CCGGCGACCGTACGCGGTTGCGAATGTGTGTCTTCACACCGTGAATAAACCCTAATTCCC
JMFF009I14+ CCGGCGACCGTACGCGGTTGCGAATGTGTGTCTTCACACCGTGAATAAACCCTAATTCCC
                      ____________________________________________________________
consensus CCGGCGACCGTACGCGGTTGCGAATGTGTGTCTTCACACCGTGAATAAACCCTAATTCCC
 
. : . : . : . : . : . :
JMSF016O24+ GTGTTCCAGAGAGTTGAAAGACTATTCGCTCCGACCAGAAT
JMFF009I14+ GTGTTCCAGAGAGTTGAAAGACTATTCGCTCCGACCAGAATGAAAGAAGGAAGAAAAGGG
                      ____________________________________________________________
consensus GTGTTCCAGAGAGTTGAAAGACTATTCGCTCCGACCAGAATGAAAGAAGGAAGAAAAGGG