Contig 005896:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006B08Sequence444005896 (3)ref|XP_009791101.1|8e-26PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 [Nicotian588021222emb|CDO99003.1|2e-46unnamed protein product [Coffea canephora]
JMFF027M17Sequence566005896 (3)ref|XP_009791101.1|2e-64PREDICTED: nuclear transcription factor Y subunit C-9-like isoform X1 [Nicotian747005896 (3)ref|XP_006349233.1|2e-93PREDICTED: nuclear transcription factor Y subunit C-9 isoform X4 [Solanum tuber

Alignment

This contig is upended


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rJMFF027M17- CATAATGCA
                      ____________________________________________________________
consensus CATAATGCA
 
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rJMFF027M17- TAATGCATAATTCATTGCATCCAGACAGGCAGGCAGCAGTACAGGTATTAAAAAACAAGA
                      ____________________________________________________________
consensus TAATGCATAATTCATTGCATCCAGACAGGCAGGCAGCAGTACAGGTATTAAAAAACAAGA
 
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rJMFF027M17- ACCAACACACACTTGGTTCTTCAAATGTTATCCTGTATGTATCAAGAGTTGTATTATGTG
                      ____________________________________________________________
consensus ACCAACACACACTTGGTTCTTCAAATGTTATCCTGTATGTATCAAGAGTTGTATTATGTG
 
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rJMFF027M17- GCAGGCAGTTTATTCTGGGGTGAATGAGATCTCCATTATACTGTTTGTTGCATACACATA
                      ____________________________________________________________
consensus GCAGGCAGTTTATTCTGGGGTGAATGAGATCTCCATTATACTGTTTGTTGCATACACATA
 
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rJMFF027M17- TAATCCCTCCCAGAGTACATTATCTTTCATCATGGTCCATTGATGCTTAAGAATCTGATG
                      ____________________________________________________________
consensus TAATCCCTCCCAGAGTACATTATCTTTCATCATGGTCCATTGATGCTTAAGAATCTGATG
 
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rJMFF027M17- GAGGTTGCTGTTGTTGCTGAGGCCACATTGTCTGAGCCATATAGGGACGGGGCTGCTGTC
                      ____________________________________________________________
consensus GAGGTTGCTGTTGTTGCTGAGGCCACATTGTCTGAGCCATATAGGGACGGGGCTGCTGTC
 
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rJMFF027M17- CATAAAGAGTTTGGTCAACAGGCTTACCCATGTACATCCCCCCCGAGGCTCCTACCTGCG
                      ____________________________________________________________
consensus CATAAAGAGTTTGGTCAACAGGCTTACCCATGTACATCCCCCCCGAGGCTCCTACCTGCG
 
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rJMFF027M17- AAGCAGACTGTGGTGCCATGTAATAGTATGGAACATCAGTAGGACCTCCAACAGGAAGAG
                      ____________________________________________________________
consensus AAGCAGACTGTGGTGCCATGTAATAGTATGGAACATCAGTAGGACCTCCAACAGGAAGAG
 
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rJMFF027M17- TCCCTCTAGGGATAGATGCAAGCACCTCGTCTTTCAAATCCTCTCTTGGCACAATGTCAA
                      ____________________________________________________________
consensus TCCCTCTAGGGATAGATGCAAGCACCTCGTCTTTCAAATCCTCTCTTGGCACAATGTCAA
 
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rJMFF027M17- CCAAGAAGTCAAAGATGTCAGTCCTTGTGATGGCCGCCGCAATGTCATTTTTCTGGAGTG
                      ____________________________________________________________
consensus CCAAGAAGTCAAAGATGTCAGTCCTTGTGATGGCCGCCGCAATGTCATTTTTCTGGAGTG
 
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rJMFF027M17- TCCTCCTCTTATTCTCCTCGGTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
JMFF027M17+ GTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
                      ____________________________________________________________
consensus TCCTCCTCTTATTCTCCTCGGTGTGGTTCCATGCACGCAATGTCAATTCAAGGATAAACA
 
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rJMFF027M17- TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
JMFF027M17+ TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
                      ____________________________________________________________
consensus TCTCACATGCCCGAGCAAAAACAACTGGTGCTTCTGCAGATATCATCCTAACATCCTCAT
 
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rJMFF027M17- CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAG
JMFF027M17+ CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAGCAA
JMFF006B08+ AGCTATGGTTCTTGAAATCAGCAA
                      ____________________________________________________________
consensus CCGCCTTCATAATCTTCTTAATTCTAGCCAATGGCAAGCTATGGTTCTTGAAATCAGCAA
 
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JMFF027M17+ CATGCTCGATGTCTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
JMFF006B08+ CATGCTCGATGTNTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
                      ____________________________________________________________
consensus CATGCTCGATGTCTTGGTATTGATTTGCCCAAAACTGTTGAAGTTGCTGCTGCAACTGTT
 
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JMFF027M17+ GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
JMFF006B08+ GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
                      ____________________________________________________________
consensus GTTGTTGCTGTTGCTGTATGTGCTGATACGCAAGCTGAGCAGAGGAGGTAGGAAGCCCAA
 
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JMFF027M17+ CGGTTTGAGGGGATTGGATAGCACCGGGAGATGCAGCAGGAATGGACACAGTCATCTGGT
JMFF006B08+ CGGTTTGAGGGGATTGGATAGCNCCGGGAGATGCAGCAGGAATGGACACAGTCATNTGGT
                      ____________________________________________________________
consensus CGGTTTGAGGGGATTGGATAGCACCGGGAGATGCAGCAGGAATGGACACAGTCATCTGGT
 
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JMFF027M17+ TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
JMFF006B08+ TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
                      ____________________________________________________________
consensus TTGATTGATATGAAGGAGCTCCATATCCCATCGCAGCACCAGAGCTGGTCACAATTCCCA
 
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JMFF027M17+ TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
JMFF006B08+ TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
                      ____________________________________________________________
consensus TACCTGGTGGTTGCCCATTTCCTTGATGATCCATTTCAAGCAAGTGTACTAGCTTCGAAA
 
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JMFF027M17+ CTTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
JMFF006B08+ ATTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
                      ____________________________________________________________
consensus CTTGGATATTTTAGTCACTGTTACCTGTATGTAAGTTATAGTCTTTATATCTCCTCCAAG
 
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JMFF027M17+ ATCAGCTATCGCTAGAACTGAGCTGGGTGATGATGGAAGGAGAGT
JMFF006B08+ ATCAGCTATCGCTAAAACTGAGCTGGGTGATGATGGAAGGAGAGTGGGTGTTAGGGTTTT
                      ____________________________________________________________
consensus ATCAGCTATCGCTAGAACTGAGCTGGGTGATGATGGAAGGAGAGTGGGTGTTAGGGTTTT