| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004F12 | Sequence | 541 | 005890 (10) | emb|CDO99889.1| | 4e-40 | unnamed protein product [Coffea canephora] | 524 | 005890 (10) | emb|CDO99889.1| | 3e-40 | unnamed protein product [Coffea canephora] |
| JMFF012J07 | Sequence | 479 | 005890 (10) | emb|CDO99889.1| | 2e-40 | unnamed protein product [Coffea canephora] | 521 | 005890 (10) | emb|CDO99889.1| | 3e-40 | unnamed protein product [Coffea canephora] |
| JMFN004N08 | Sequence | 454 | 005890 (10) | emb|CDP21618.1| | 1e-25 | unnamed protein product [Coffea canephora] | |||||
| JMFN006J02 | Sequence | 532 | 005890 (10) | emb|CDO99889.1| | 4e-40 | unnamed protein product [Coffea canephora] | |||||
| JMFN029H16 | Sequence | 429 | 005890 (10) | emb|CDO99889.1| | 9e-41 | unnamed protein product [Coffea canephora] | |||||
| JMFS059E11 | Sequence | 520 | 005890 (10) | emb|CDO99889.1| | 3e-40 | unnamed protein product [Coffea canephora] | |||||
| JMFS059F10 | Sequence | 517 | 005890 (10) | emb|CDO99889.1| | 3e-40 | unnamed protein product [Coffea canephora] | |||||
| JMSF031G10 | Sequence | 555 | 024209 | emb|CDO99889.1| | 4e-40 | unnamed protein product [Coffea canephora] | 499 | 005890 (10) | emb|CDO99889.1| | 2e-40 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMFN004N08+ TAAGA
JMFS059F10+ CTTAAGA
JMFS059E11+ TAAGA
JMFN006J02+ AAGA
JMFF004F12+ A
____________________________________________________________
consensus CTTAAGA
. : . : . : . : . : . :
JMFN004N08+ ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
JMFS059F10+ ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
JMFS059E11+ ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
JMFN006J02+ ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
rJMFF004F12- TTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
rJMFF012J07- TTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
rJMSF031G10- TTACAGAAAACATCATAACAA
JMFF012J07+ AA
JMFF004F12+ ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
____________________________________________________________
consensus ATCTCCAGAAATGACATTGATTTTGTAGTAATAACCATGTTACAGAAAACATCATAACAA
. : . : . : . : . : . :
JMFN004N08+ ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
JMFS059F10+ ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
JMFS059E11+ ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
JMFN006J02+ AATAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
rJMFF004F12- ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
rJMFF012J07- ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
rJMSF031G10- ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
JMFN029H16+ ATCAATTCTGGTACAGATACCTTCACTACAAAGCCA
JMFF012J07+ ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
JMFF004F12+ ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
____________________________________________________________
consensus ACTAGGAAATATTTTTGGTTAAACATCAATTCTTGTACAGATACCTTCACTACAAAGCCA
. : . : . : . : . : . :
JMFN004N08+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFS059F10+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFS059E11+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFN006J02+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
rJMFF004F12- TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
rJMFF012J07- TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
rJMSF031G10- TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFN029H16+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFF012J07+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
JMFF004F12+ TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
____________________________________________________________
consensus TCCAATAAGCTCATAGGCCATGAACATATATAGTTTTAAAGCTTTTAGTCGCCGCGATGG
. : . : . : . : . : . :
JMFN004N08+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFS059F10+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFS059E11+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFN006J02+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
rJMFF004F12- GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
rJMFF012J07- GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
rJMSF031G10- GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFN029H16+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFF012J07+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
JMFF004F12+ GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
____________________________________________________________
consensus GATGATCATTATCAAGCAGCAGGAACAGCTTCCGGATTCGGCTTTGATTCAGTTCCAGCT
. : . : . : . : . : . :
JMFN004N08+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFS059F10+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFS059E11+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFN006J02+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
rJMFF004F12- GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
rJMFF012J07- GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
rJMSF031G10- GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFN029H16+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFF012J07+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
JMFF004F12+ GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
____________________________________________________________
consensus GCTGCTGCTTCCGCTTCCCAGAACGACGTTTTCTTCCCAGTTTTTGAAACCGTCTGGAGA
. : . : . : . : . : . :
JMFN004N08+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFS059F10+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFS059E11+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFN006J02+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
rJMFF004F12- ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
rJMFF012J07- ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
rJMSF031G10- ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFN029H16+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFF012J07+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
JMFF004F12+ ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
____________________________________________________________
consensus ACATCCTCTGGCTTCACATTACCCTTCACTGTCACTTTTTGCTCCTTCAAATCAATGTCG
. : . : . : . : . : . :
JMFN004N08+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTT-ACAGCCCCAACACAGCCCTGG
JMFS059F10+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
JMFS059E11+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
JMFN006J02+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
rJMFF004F12- AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
rJMFF012J07- AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
rJMSF031G10- AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
JMFN029H16+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
JMFF012J07+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
JMFF004F12+ AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
____________________________________________________________
consensus AATGACTCTACACCTTCCATCTTCCCCAAAACCCTGTTGACAGCCCCAACACAGCCCTGG
. : . : . : . : . : . :
JMFN004N08+ CATGACATGCCAACCTTGAGAACAACAGTC
JMFS059F10+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
JMFS059E11+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
JMFN006J02+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
rJMFF004F12- CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
rJMFF012J07- CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
rJMSF031G10- CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
JMFN029H16+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
JMFF012J07+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
JMFF004F12+ CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
____________________________________________________________
consensus CATGACATGCCAACCTTGAGAACAACAGTCTGAGACATGGTGACAAATCGGATTGAGAGG
. : . : . : . : . : . :
JMFS059F10+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTC
JMFS059E11+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTT
JMFN006J02+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGA
rJMFF004F12- AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGAT
rJMFF012J07- AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGAT
rJMSF031G10- AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGAT
JMFN029H16+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTG
JMFF012J07+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGAT
JMFF004F12+ AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGATGAT
____________________________________________________________
consensus AAAAAGAAAGTGCTGAGATTTGTGTGTTTCTTGGGGGAAAGCCAATGAGAGAAGGATGAT