Contig 005879:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-                                                TGATCATATCATACATATATGT
                      ____________________________________________________________
consensus                                                   TGATCATATCATACATATATGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          GCTAATTATAAAGATGATGAACATGCAAGGCAGGTATGAATATATATTATATATAATATT
                      ____________________________________________________________
consensus             GCTAATTATAAAGATGATGAACATGCAAGGCAGGTATGAATATATATTATATATAATATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          GGGTAGTTTTACAATTTGGAGAAAGTGGAAGCAGCAGGAGTAGTAGAGCCTGCAAAAAAA
                      ____________________________________________________________
consensus             GGGTAGTTTTACAATTTGGAGAAAGTGGAAGCAGCAGGAGTAGTAGAGCCTGCAAAAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          ATGCCGGACGGGAGTTCGTCGGCGGGAAGCAAGGCGAGCTTGGCCCCGATCTCCGCCGCG
                      ____________________________________________________________
consensus             ATGCCGGACGGGAGTTCGTCGGCGGGAAGCAAGGCGAGCTTGGCCCCGATCTCCGCCGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          TCTTCCGCCGTGTGCTTCCCCTTGCCGCCGGTCATGGAGGTCTGAGTGAATCCGGGGCAG
                      ____________________________________________________________
consensus             TCTTCCGCCGTGTGCTTCCCCTTGCCGCCGGTCATGGAGGTCTGAGTGAATCCGGGGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          AAGCAGTTGACGCTTAATCCACGGCCTCGGTAACGCCGAGCCAAAAGCTTAGAGTAAGCG
                      ____________________________________________________________
consensus             AAGCAGTTGACGCTTAATCCACGGCCTCGGTAACGCCGAGCCAAAAGCTTAGAGTAAGCG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          TTGAGGGCAAGCTTTGAGACGGCGTAGTCCGTCCACACTTCCGGCCACCCATTCCCTCTC
                      ____________________________________________________________
consensus             TTGAGGGCAAGCTTTGAGACGGCGTAGTCCGTCCACACTTCCGGCCACCCATTCCCTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          CACGACCCCTTTTTCACATCCCCCAGAAAGGATTTCACCATCTCCTCTATTTGCTCCTCT
JMFN035G04+                          ACATCCCCCAGAAAGGATTTCACCATCTCCTCTATTTGCTCCTCT
                      ____________________________________________________________
consensus             CACGACCCCTTTTTCACATCCCCCAGAAAGGATTTCACCATCTCCTCTATTTGCTCCTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          CTTAGCTTTTCTTCATCTTCCAGTTCTTCTCTTAGTTTTGGGTTTTGAAGCTTGTTGAAT
JMFN035G04+           CTTAGCTTTTCTTCATCTTCCAGTTCTTCTCTTAGTTTTGGGTTTTGAAGCTTGTTGAAT
JMFF002F13+                                       CTCTTAGTTTTGGGTTTTGAAGCTTGTTGAAT
                      ____________________________________________________________
consensus             CTTAGCTTTTCTTCATCTTCCAGTTCTTCTCTTAGTTTTGGGTTTTGAAGCTTGTTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          TGGCCGAGCCTGGAGCTGATGTTAAGTATTCGGGCGGTGGAAGAGGAGCAGCGAAACATG
JMFN035G04+           TGGCCGAGCCTGGAGCTGATGTTAAGTATTCGGGCGGTGGAAGAGGAGCAGCGAAACATG
JMFF002F13+           TGGCCGAGCCTGGAGCTGATGTTAAGTATTCGGGCGGTGGAAGAGGAGCAGCGAAACATG
                      ____________________________________________________________
consensus             TGGCCGAGCCTGGAGCTGATGTTAAGTATTCGGGCGGTGGAAGAGGAGCAGCGAAACATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          GGGAGAAGGGCGGCGATGAGCAGTTTTGGGCCGTAGTAATTGGTGGCTATCACCGTCTCC
JMFN035G04+           GGGAGAAGGGCGGCGATGAGCAGTTTTGGGCCGTAGTAATTGGTGGCTATCACCGTCTCC
JMFF002F13+           GGGAGAAGGGCGGCGATGAGCAGTTTTGGGCCGTAGTAATTGGTGGCTATCACCGTCTCC
                      ____________________________________________________________
consensus             GGGAGAAGGGCGGCGATGAGCAGTTTTGGGCCGTAGTAATTGGTGGCTATCACCGTCTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          GCATGCTCCACCGAGTTCTGGTCGACGTCGTTGAACGACACGGCGGCGTTATTTACCAGT
JMFN035G04+           GCATGCTCCACCGAGTTCTGGTCGACGTCGTTGAACGACACGGCGGCGTTATTTACCAGT
JMFF002F13+           GCATGCTCCACCGAGTTCTGGTCGACGTCGTTGAACGACACGGCGGCGTTATTTACCAGT
                      ____________________________________________________________
consensus             GCATGCTCCACCGAGTTCTGGTCGACGTCGTTGAACGACACGGCGGCGTTATTTACCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          ATATCTAAGGCGGAGAAAGTGCAGCGAAACCAGGAAGCAAAGTCTGCGATGGAATGGCGG
JMFN035G04+           ATATCTAAGGCGGAGAAAGTGCAGCGAAACCAGGAAGCAAAGTCTGCGATGGAATGGCGG
JMFF002F13+           ATATCTAAGGCGGAGAAAGTGCAGCGAAACCAGGAAGCAAAGTCTGCGATGGAATGGCGG
                      ____________________________________________________________
consensus             ATATCTAAGGCGGAGAAAGTGCAGCGAAACCAGGAAGCAAAGTCTGCGATGGAATGGCGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMFF002F13-          TCTGAAACATCAAGTCGG                                          
JMFN035G04+           TCTGAAACATCAAGTCGGTGGAACCAAACACGAAGCCCTAATCTCCTCAGCCGCTCGGCA
JMFF002F13+           TCTGAAACATCAAGTCGGTGGAACCAAACACGAAGCCCTAATCTCCTCAGCCGCTCGGCA
                      ____________________________________________________________
consensus             TCTGAAACATCAAGTCGGTGGAACCAAACACGAAGCCCTAATCTCCTCAGCCGCTCGGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035G04+           GCCTCAAGGCCTCTTGCGTTATCCCTCGCCGTCAGAACCACCGTTAAACCCAGTTCCGCC
JMFF002F13+           GCCTCAAGGCCTCTTGCGTTA-CCCTCGCCGTCAGAACCACCGTTAAACCCAGTTCCGCC
                      ____________________________________________________________
consensus             GCCTCAAGGCCTCTTGCGTTATCCCTCGCCGTCAGAACCACCGTTAAACCCAGTTCCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035G04+           AGCCGCTTCACCAGCGCAAACCCGATCCCCTTGTTCGCTCCGGTCACTATCGCCACCGTC
JMFF002F13+           AGCCGCTTCACCAGCGCAAACCCGATCCCCTTGTTCGCTCCGGTCACTATCGCCACCGTC
                      ____________________________________________________________
consensus             AGCCGCTTCACCAGCGCAAACCCGATCCCCTTGTTCGCTCCGGTCACTATCGCCACCGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035G04+           TCCTCCGACCACCACCTGGTTTTTGGGAGGGAGGGAGAAGAGTATTGCGAGAGAATTGAC
JMFF002F13+           TCCTCCGACCACCACCTGGTTTTTGGGAGGGAGGGAGAAGAGTATTGCGAGAGAATTGAC
                      ____________________________________________________________
consensus             TCCTCCGACCACCACCTGGTTTTTGGGAGGGAGGGAGAAGAGTATTGCGAGAGAATTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMFN035G04+           GCCATGGCCGCCGGAAAGAAATGGTGTGTTATGAGAAGA                     
JMFF002F13+           GCCATGGCCGCCGGAAAGAAATGGTGTGTTATGAGAAGACAATAATGTATAGAAAAGAAT
                      ____________________________________________________________
consensus             GCCATGGCCGCCGGAAAGAAATGGTGTGTTATGAGAAGACAATAATGTATAGAAAAGAAT