Contig 005864:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001G09Sequence175005864 (3)
JMFF003L14Sequence499003571 (4)gb|AID55340.1|2e-271-deoxy-D-xylulose 5-phosphate reductoisomerase [Actinidia arguta]751005864 (3)gb|KJB37089.1|2e-117hypothetical protein B456_006G189200 [Gossypium raimondii]
JMSF009K13Sequence404003571 (4)ref|XP_011016464.1|1e-07PREDICTED: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic-like 714005864 (3)gb|KJB37089.1|9e-121hypothetical protein B456_006G189200 [Gossypium raimondii]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF009K13+ TATTCAATAAGGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
rJMFF003L14+ GGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
                      ____________________________________________________________
consensus TATTCAATAAGGGTCTAGAAGTTATTGAAGCTCATTATCTTTTTGGGGCCG
 
. : . : . : . : . : . :
rJMSF009K13+ AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
rJMFF003L14+ AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
                      ____________________________________________________________
consensus AGTATGATGACATTGAAATTGTGATTCATCCGCAATCCATCATACATTCCATGATCGAAA
 
. : . : . : . : . : . :
rJMSF009K13+ CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
rJMFF003L14+ CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
                      ____________________________________________________________
consensus CAAAGGATTCGTCTGTTTTGGCACAATTGGGGTGGCCCGATATGCGTATTCCTATCCTTT
 
. : . : . : . : . : . :
rJMSF009K13+ ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
rJMFF003L14+ ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
                      ____________________________________________________________
consensus ACACAATGTCCTGGCCGGATAGAATTTATTGTTCTGAGATCACTTGGCCACGCCTCGATT
 
. : . : . : . : . : . :
rJMSF009K13+ TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
rJMFF003L14+ TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
                      ____________________________________________________________
consensus TGTGCAAGCTTGGGTCGTTGACGTTTAAGGCCCCTGACAAAGTAAAATACCCATCCATGG
 
. : . : . : . : . : . :
rJMSF009K13+ ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
rJMFF003L14+ ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
                      ____________________________________________________________
consensus ATCTCGCTTATGCTGCTGGACGGGCAGGAGGGACCATGACGGGAGTTCTCAGTGCAGCAA
 
. : . : . : . : . : . :
rJMSF009K13+ ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
rJMFF003L14+ ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
                      ____________________________________________________________
consensus ATGAAAAAGCGGTTGAATTATTTATCGACGAGAAAATTAGCTACCTGGACATTTTCAAGG
 
. : . : . : . : . : . :
rJMSF009K13+ TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
rJMFF003L14+ TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
                      ____________________________________________________________
consensus TTGTTGAGCTAACCTGTGATAAGCATCAGGAAGAGTTGGTGGCCTCGCCTTCCTTGGAGG
 
. : . : . : . : . : . :
rJMSF009K13+ AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
rJMFF003L14+ AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
                      ____________________________________________________________
consensus AAATCGTACATTATGATTTATGGGCTCGGGATTACGCTGCCAGTTTGAAAACCTCTAGCG
 
. : . : . : . : . : . :
rJMSF009K13+ GCTTGAGCCCAGCGCTCGTATAACCAGCTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
rJMFF003L14+ GCTTGAGCCCAGCGCTCGTATAACCAACTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
                      ____________________________________________________________
consensus GCTTGAGCCCAGCGCTCGTATAACCAGCTGGCCGGGAGCGCTATTGGTCGGAGGAGCAAA
 
. : . : . : . : . : . :
rJMSF009K13+ GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
rJMFF003L14+ GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
rJMCP001G09- CACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
                      ____________________________________________________________
consensus GCCATCACGTTACCGGCGAAGGCGAGTTTCCGGGGAAAAGTGAAAGGGGAATGGGAGGGC
 
. : . : . : . : . : . :
rJMSF009K13+ AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
rJMFF003L14+ AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
rJMCP001G09- AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
                      ____________________________________________________________
consensus AGCAGGAGACAGGCAAATGTATCACATTTGAAATAAACATAATGTATGTTTCTGTGAGCA
 
. : . : . : . : . : . :
rJMSF009K13+ TTT
rJMFF003L14+ TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAAT
rJMCP001G09- TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAATTTATGATTCC
                      ____________________________________________________________
consensus TTTGTAATGATACTTCATTATGAGCTGCAAAGCCTGGTAATGGTATAAATTTATGATTCC