Contig 005862:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006G01Sequence593005862 (3)ref|XP_009622620.1|2e-90PREDICTED: myosin-1-like [Nicotiana tomentosiformis]
JMCP010C01Sequence627005862 (3)ref|XP_009622620.1|9e-96PREDICTED: myosin-1-like [Nicotiana tomentosiformis]
JMCP018B08Sequence584005862 (3)gb|ABK94124.1|4e-85unknown [Populus trichocarpa]

Alignment

This contig is upended


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rJMCP006G01+                                ATACAATTTATTTACGTTTACAAATCACTCAGTTAAAC
JMCP010C01+                                AATACAATTTATTTACGTTTACAAATCACTCAGTTAAAC
                      ____________________________________________________________
consensus                                  AATACAATTTATTTACGTTTACAAATCACTCAGTTAAAC
 
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rJMCP006G01+          CTTGAACTATTCCTCCTTCCCCACCATTTCTTTTTCATTTTATCACTAGCCCCTTCTTCA
JMCP010C01+           CTTGAACTATTCCTCCTTCCCCACCATTTCTTTTTCATTTTATCACTAGCCCCTTCTTCA
JMCP018B08+                           TTCCCCACCATTTCTTTTTCATTTTATCACTAGggggaaCTTCA
                      ____________________________________________________________
consensus             CTTGAACTATTCCTCCTTCCCCACCATTTCTTTTTCATTTTATCACTAGCCCCTTCTTCA
 
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rJMCP006G01+          CTTCCCAGTTTATGCAATATAACCTTGGTTTCCTTTAGCCTTACTCCGTAGTCCTTTTTC
JMCP010C01+           CTTCCCAGTTTATGCAATATAACCTTGGTTTCCTTTAGCCTTACTCCGTAGTCCTTTTTC
JMCP018B08+           CTTCCCAGTTTATGCGATATAACCTTGGTTTCCTTTAGCCTTACTCCGTAGTCCTTTTTC
                      ____________________________________________________________
consensus             CTTCCCAGTTTATGCAATATAACCTTGGTTTCCTTTAGCCTTACTCCGTAGTCCTTTTTC
 
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rJMCP006G01+          CAAGATTCAAACATATGTTTCAGTCTagaAAGCTCATGATCAGGATTCAAGTTGGCCTCG
JMCP010C01+           CAAGATTCAAACATATGTTTCAGagTTCTAAGCTCATGATCAGGATTCAAGTTGGCCTCG
JMCP018B08+           CAAGATTCAAACATATGTTTCAGTCTTCTAAGCTCATGATCAGGATTCAAGTTGGCCTCG
                      ____________________________________________________________
consensus             CAAGATTCAAACATATGTTTCAGTCTTCTAAGCTCATGATCAGGATTCAAGTTGGCCTCG
 
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rJMCP006G01+          GTCAGACCAGATTTAACCTCAACCAAAAACTTTGCATCGTCACCAAATACTTGACTCCTT
JMCP010C01+           GTCAGACCAGATTTAACCTCAACCAAAAACTTTGCATCGTCACCAAATACTTGACTCCTT
JMCP018B08+           GTCAGACCAGATTTAACCTCAACCAAAAACTTTGCATCGTCACCAAATACTTGACTCCTT
                      ____________________________________________________________
consensus             GTCAGACCAGATTTAACCTCAACCAAAAACTTTGCATCGTCACCAAATACTTGACTCCTT
 
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rJMCP006G01+          TGTTCAAACTCTTCAcgaAATTGGCCAATAACACTTAGACCTGCACGCACAGGCCTCACT
JMCP010C01+           TGTTCAAACTCTTCAGCTAATTGGCCAATAACACTTAGACCTGCACGCACAGGCCTCACT
JMCP018B08+           TGTTCAAACTCTTCAGCTAATTGGCCAATAACACTTAGACCTGCACGCACAGGCCTCACT
                      ____________________________________________________________
consensus             TGTTCAAACTCTTCAGCTAATTGGCCAATAACACTTAGACCTGCACGCACAGGCCTCACT
 
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rJMCP006G01+          CCATTGTTCTCGAGGGCGGTCCTGTTGTTCCCTATATCCCAAGTAGACTCTTTcTCGTCA
JMCP010C01+           CCATTGTTCTCGAGGGCGGTCCTGTTGTTCCCTATATCCCAAGTAGACCCTTTGTCGTCA
JMCP018B08+           CCATTGTTCTCGAGGGCGGTCCTGTTGTTCCCTATATCCCAAGTAGACTCTTTGTCGTCA
                      ____________________________________________________________
consensus             CCATTGTTCTCGAGGGCGGTCCTGTTGTTCCCTATATCCCAAGTAGACTCTTTGTCGTCA
 
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rJMCP006G01+          CTTGCATTCACTGATGCATCTGAGTTCCGTGCAGAATCATCTAAAGCCAGGCTCaTCTTC
JMCP010C01+           CTTGCATTCACTGATGCAagaGAGTTCCGTGCAGAATCATCTAAAGCCAGGCagaTCTTC
JMCP018B08+           CTTGCATTCACTGATGCATCTGAGTTCCGTGCAGAATCATCTAAAGCCAGGCTCTTCTTC
                      ____________________________________________________________
consensus             CTTGCATTCACTGATGCATCTGAGTTCCGTGCAGAATCATCTAAAGCCAGGCTCTTCTTC
 
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rJMCP006G01+          GCAATAGATAGACTTGACTGTAATGATCTCATTTGTTTTTGCCACACTTCTTCCATAGAC
JMCP010C01+           GCAATAGATAGACTTGACTGTAATGATCTCATTTGTTTTTGCCACACTTCTTCCATAGAC
JMCP018B08+           GCAATAGATAGACTTGACTGTAATGATCTCATTTGTTTTTGCCACACTTCTTCCATAGAC
                      ____________________________________________________________
consensus             GCAATAGATAGACTTGACTGTAATGATCTCATTTGTTTTTGCCACACTTCTTCCATAGAC
 
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rJMCP006G01+          TTCATTTTCAACTCATATTCTGACCAACGGTTTTCATACTGCTGGAGCCGTTGGTGAAGG
JMCP010C01+           TTCATTTTCAACTCATATTCTGACCAACGGTTTTCATACTGCTGGAGCCGTTGGTGAAGG
JMCP018B08+           TTCATTTTCAACTCATATTCTGACCAACGGTTTTCATACTGCTGGAGCCGTTGGTGAAGG
                      ____________________________________________________________
consensus             TTCATTTTCAACTCATATTCTGACCAACGGTTTTCATACTGCTGGAGCCGTTGGTGAAGG
 
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rJMCP006G01+          ATGTCATTCTCCTCA                                             
JMCP010C01+           ATGTCATTCTCCTCATCTTTTTCTCTTAGTGCAGCTTCAGCCCTTAGA            
JMCP018B08+           ATGTCATTCTCCTCATCTTTTTCTCTTAGTGCAGCTTCAGCCCTTAGAACTCTGCGTTGA
                      ____________________________________________________________
consensus             ATGTCATTCTCCTCATCTTTTTCTCTTAGTGCAGCTTCAGCCCTTAGAACTCTGCGTTGA