Contig 005858:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006N23Sequence387011740 (4)gb|AGB05603.1|5e-56squalene synthase [Camellia oleifera]347005858 (3)
JMSF039K01Sequence660011740 (4)ref|XP_008236983.1|4e-111PREDICTED: squalene synthase-like [Prunus mume]855005858 (3)gb|ADW78251.1|3e-90squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani
JMSF053G19Sequence624011740 (4)ref|XP_008236983.1|2e-111PREDICTED: squalene synthase-like [Prunus mume]897005858 (3)gb|ADW78251.1|6e-127squalene synthase [Withania somnifera] gb|ADO22708.1| squalene synthase [Withani

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF053G19+ TTAGCTTCAGATCATATCTCCAACTCAATGGGTTTGTTCCTCCAGAAAACAAACATC
                      ____________________________________________________________
consensus TTAGCTTCAGATCATATCTCCAACTCAATGGGTTTGTTCCTCCAGAAAACAAACATC
 
. : . : . : . : . : . :
rJMSF053G19+ ATTAGAGATTACCTTGAGGACATTAATGAGATACCAAAGTCTCGAATGTTTTGGCCCCGT
                      ____________________________________________________________
consensus ATTAGAGATTACCTTGAGGACATTAATGAGATACCAAAGTCTCGAATGTTTTGGCCCCGT
 
. : . : . : . : . : . :
rJMSF039K01+ ATGAGGAGAATTCAGTC
rJMSF053G19+ CAAATCTGGAGTAAATATGTCAATAAACTTGAGGATTTAAAAGATGAGGAGAATTCAGTC
                      ____________________________________________________________
consensus CAAATCTGGAGTAAATATGTCAATAAACTTGAGGATTTAAAAGATGAGGAGAATTCAGTC
 
. : . : . : . : . : . :
rJMSF039K01+ AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
rJMSF053G19+ AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
                      ____________________________________________________________
consensus AAGGCAGTGCAGTGCCTGAATGACATGGTCACAAATGCTTTATCACATGTAGAGGATTGT
 
. : . : . : . : . : . :
rJMSF039K01+ TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
rJMSF053G19+ TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
                      ____________________________________________________________
consensus TTGACTTACATGTCTGCTTTGCGAGATCCTTCCATCTTTAGGTTTTGTGCTATTCCACAG
 
. : . : . : . : . : . :
rJMSF039K01+ ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
rJMSF053G19+ ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
                      ____________________________________________________________
consensus ATCATGGCCATCGGAACATTAGCCATGTGCTACAACAATATTGAAGTCTTCAGGGGTGTT
 
. : . : . : . : . : . :
rJMSF039K01+ GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
rJMSF053G19+ GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
                      ____________________________________________________________
consensus GTAAAGATGAGACGTGGTCTTACTGCTAAGGTCATTGACCGGACCAAGACAATGGCAGAT
 
. : . : . : . : . : . :
rJMSF039K01+ GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
rJMSF053G19+ GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
                      ____________________________________________________________
consensus GTCTATGGTGCTTTTTTTGACTTTTCTTGTATGCTGATGTCAAAGGTTGACTACAATGAT
 
. : . : . : . : . : . :
rJMSF039K01+ CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
rJMSF053G19+ CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
                      ____________________________________________________________
consensus CCTAGTGCAACCAAAACTGTGAAGAGGCTTGAAGCAATTCTGAAGACTTGCAGGGAGTCT
 
. : . : . : . : . : . :
rJMSF006N23+ TCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
rJMSF039K01+ GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
rJMSF053G19+ GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
                      ____________________________________________________________
consensus GGAACCTTGAATAAGAGGCAATCTTACATTATTATGAGGAGGAGCAAGCCCAATTACTCT
 
. : . : . : . : . : . :
rJMSF006N23+ CCAGCTGTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
rJMSF039K01+ CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
rJMSF053G19+ CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
                      ____________________________________________________________
consensus CCAGCTTTGATTGTCTTCTTTATCATTCTGGCTGTTCTTGTGTACCATTTTGGAAACCAG
 
. : . : . : . : . : . :
rJMSF006N23+ CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
rJMSF039K01+ CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
rJMSF053G19+ CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
                      ____________________________________________________________
consensus CGTACTTTCGCATGAATGATGTTATTAGGAGATTAAAAGGAAGTATTAAGCTCACCTTTT
 
. : . : . : . : . : . :
rJMSF006N23+ CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
rJMSF039K01+ CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
rJMSF053G19+ CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGANAGCGTGTTCTTTGGTTTC
                      ____________________________________________________________
consensus CACTATCCCTATAAGCTTGCAGGAAACCAGCAGAATAAAGA-AGTGTGTTCTTTGGTTTC
 
. : . : . : . : . : . :
rJMSF006N23+ TATNAGTATTNTGGNTCATATTATGATGTAAAGCTCNCATGCTAGNTATTAC
rJMSF039K01+ TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTAC
rJMSF053G19+ TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTACAGTACTTA
                      ____________________________________________________________
consensus TATTAGTATTTTGGGTCATATTATGATGTAAAGCTCACATGCTAGTTATTACAGTACTTA
 
. : . : . : . : . : . :
rJMSF053G19+ TTACAACATTATAGTAGGTTTCTCGTTGTGCTGTGCTGTGCTGTCCAGATGTTATGTAAA
                      ____________________________________________________________
consensus TTACAACATTATAGTAGGTTTCTCGTTGTGCTGTGCTGTGCTGTCCAGATGTTATGTAAA