Contig 005855:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF052J14+                                              CCTTCTGCTTTATTGCATGGNCAA
                      ____________________________________________________________
consensus                                                 CCTTCTGCTTTATTGCATGGNCAA
 
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rJMSF052J14+          AGAGAGACACNTGAGCAGGGTGAACGCAACTACAATAGGTTTGGTGGTTGGTTGGGAAAG
                      ____________________________________________________________
consensus             AGAGAGACACNTGAGCAGGGTGAACGCAACTACAATAGGTTTGGTGGTTGGTTGGGAAAG
 
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rJMSF052J14+          AACTCTACAATGGGAAAAAACTACAGACTTCTAGAGGATTTGCGTTTTCATCTCCTGGCA
                      ____________________________________________________________
consensus             AACTCTACAATGGGAAAAAACTACAGACTTCTAGAGGATTTGCGTTTTCATCTCCTGGCA
 
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rJMSF012M14+            CTCTGAATCTATCTTGGAGAGGAGATCTTTGAGACTTGACTACATGACTCTTCTTCGT
rJMSF052J14+          TCCTCTGAATCTATCTTGGAGAGGAGATCTTTGAGACTTGACTACATGACTCTTCTTCGT
                      ____________________________________________________________
consensus             TCCTCTGAATCTATCTTGGAGAGGAGATCTTTGAGACTTGACTACATGACTCTTCTTCGT
 
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rJMSF012M14+          AAAAAGTTGACTGATCCACTAAGAACACTGGCAAAGGATGAAGCTGTCGAAACGGTTGTG
rJMSF052J14+          AAAAAGTTGACTGATCCACTAAGAACACTGGCAAAGGATGAAGCTGTCGAAACGGTTGTG
                      ____________________________________________________________
consensus             AAAAAGTTGACTGATCCACTAAGAACACTGGCAAAGGATGAAGCTGTCGAAACGGTTGTG
 
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rJMSF012M14+          GATTTCATGGATTCATACTCCATAACCCAGGATGACTTTGATAGCATTATGGAGATATCA
rJMSF052J14+          GATTTCATGGATTCATACTCCATAACCCAGGATGACTTTGATAGCATTATGGAGATATCA
                      ____________________________________________________________
consensus             GATTTCATGGATTCATACTCCATAACCCAGGATGACTTTGATAGCATTATGGAGATATCA
 
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rJMSF012M14+          AAATTCCAGGGGCACTCAAATCCAATGGATGGAATACAGCCTGCAGTTAAAGCTGCACTG
rJMSF052J14+          AAATTCCAGGGGCACTCAAATCCAATGGATGGAATACAGCCTGCAGTTAAAGCTGCACTG
                      ____________________________________________________________
consensus             AAATTCCAGGGGCACTCAAATCCAATGGATGGAATACAGCCTGCAGTTAAAGCTGCACTG
 
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rJMSF012M14+          ACAAAAGCATATAATAAAGGAAGCAGTTCTCGTGTGATTCGCACTGCTGATTTAATCACC
rJMSF052J14+          ACAAAAGCATATAATAAAGGAAGCAGTTCTCGTGTGATTCGCACTGCTGATTTAATCACC
                      ____________________________________________________________
consensus             ACAAAAGCATATAATAAAGGAAGCAGTTCTCGTGTGATTCGCACTGCTGATTTAATCACC
 
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rJMSF012M14+          CTTCCTGGATTAAAGAAGGCCCCTAAGAAGCGGGTTGCTGCAATGCTGGAGCCCATTGAT
rJMSF052J14+          CTTCCTGGATTAAAGAAGGCCCCTAAGAAGCGGGTTGCTGCAATGCTGGAGCCCATTGAT
                      ____________________________________________________________
consensus             CTTCCTGGATTAAAGAAGGCCCCTAAGAAGCGGGTTGCTGCAATGCTGGAGCCCATTGAT
 
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rJMSF012M14+          GAAAACCTAGCAGAGGAAAATGATGACACCCTACAAGAAGATGAAGAAGGGAACTCAGAC
rJMSF052J14+          GAAAACCTAGCAGAGGAAAATGGTGACACCCTACAAGAAGATGAAGAAGGGAACTCAGAC
                      ____________________________________________________________
consensus             GAAAACCTAGCAGAGGAAAATGGTGACACCCTACAAGAAGATGAAGAAGGGAACTCAGAC
 
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rJMSF012M14+          GCAGAGGAGGAAGATGATTTACTCGATCCCGAGAAAAAGGTGCAGTTAAATCTCCAAAAT
rJMSF052J14+          GCAGAGGAGGAAGATGATTTACTCGATCCCGAGAAAAAGGTGCAGTTAAATCTCCAAAAT
                      ____________________________________________________________
consensus             GCAGAGGAGGAAGATGATTTACTCGATCCCGAGAAAAAGGTGCAGTTAAATCTCCAAAAT
 
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rJMSF012M14+          CTTAATTCAAAGGGTATCCAAGTTGATATGAAAGGTTCTGGTTCAAGTGGCAAAAAGGCG
rJMSF052J14+          CTTAATTCAAAGGGTATCCAAGTTGATATGAAAGGTTCTGGTTCAAGTGGCAAAAAGGCG
                      ____________________________________________________________
consensus             CTTAATTCAAAGGGTATCCAAGTTGATATGAAAGGTTCTGGTTCAAGTGGCAAAAAGGCG
 
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rJMSF012M14+          CCAGCAGGAAGAGGAAGAGGAAAAGCAACTTCTAAAGCTGCAGAAAAGAGCAGTGGTTCC
rJMSF052J14+          CCAGCAGGAAGAGGAAGAGGAAAAGCAACTTCTAAAGCTGCAGAAAAGAGCAGTGGTTCC
                      ____________________________________________________________
consensus             CCAGCAGGAAGAGGAAGAGGAAAAGCAACTTCTAAAGCTGCAGAAAAGAGCAGTGGTTCC
 
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rJMSF012M14+          AAGAGGAAGAGATGAATACACTAAACTTGCTTTTGAAAACAATGTAATTAGTGATATTTA
rJMSF052J14+          AAGAGGAAGAGATGAATACACTAAACTTGCTTTTGAAAACAATGTAATTAGTGATATTTA
                      ____________________________________________________________
consensus             AAGAGGAAGAGATGAATACACTAAACTTGCTTTTGAAAACAATGTAATTAGTGATATTTA
 
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rJMSF012M14+          CCTCTTTGACCCTCTTGGTTTCTTG                                   
rJMSF052J14+          CCTCTTTGACCCTCTTGGTTTCTTGNCAGAGCAGTTTGGAATGTGGCTTTTTTGGGACAT
                      ____________________________________________________________
consensus             CCTCTTTGACCCTCTTGGTTTCTTGNCAGAGCAGTTTGGAATGTGGCTTTTTTGGGACAT
 
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rJMSF052J14+          TGTTGATCAAGGTGGATTTCTGGTTTTTAATCAGTTTATTTATGTACATTGTTTGATGTT
                      ____________________________________________________________
consensus             TGTTGATCAAGGTGGATTTCTGGTTTTTAATCAGTTTATTTATGTACATTGTTTGATGTT