clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF020I18 | Sequence | 640 | 001004 (3) | ref|XP_009770676.1| | 2e-21 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] | 770 | 005846 (3) | ref|XP_009770676.1| | 2e-75 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] |
JMSF021I18 | Sequence | 325 | 001004 (3) | ref|XP_009770676.1| | 3e-14 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] | 672 | 005846 (3) | ref|XP_009770676.1| | 4e-60 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] |
JMSF051I13 | Sequence | 646 | 001004 (3) | ref|XP_009770676.1| | 1e-31 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] | 747 | 005846 (3) | ref|XP_009770676.1| | 3e-70 | PREDICTED: GTP-binding protein OBGC, chloroplastic [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
rJMSF020I18+ TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTAT
rJMSF051I13+ AGGGACAGCCTGCAAAGCCGTGGGTAT
____________________________________________________________
consensus TCCAGAAGCATCTGAAAATTGGCTATCCTTCAGGGACAGCCTGCAAAGCCGTGGGTAT
. : . : . : . : . : . :
rJMSF020I18+ GAGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCA
rJMSF021I18+ TTTTGCATGAGTGCAGTGAAGAAAGNCGGTACACATGAAGTGATATGCGCTGCA
rJMSF051I13+ GAGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCA
____________________________________________________________
consensus GAGCCTTTTTGCATGAGTGCAGTGAAGAAAGACGGTACACATGAAGTGATATGCGCTGCA
. : . : . : . : . : . :
rJMSF020I18+ TATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAA
rJMSF021I18+ TATGAGCTTGTTCGCAGGAGAAGAACTNCTNCTGAGGAAGAAGATGCNGTAGGTCCAGAA
rJMSF051I13+ TATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAA
____________________________________________________________
consensus TATGAGCTTGTTCGCAGGAGAAGAACTGCTGCTGAGGAAGAAGATGCAGTAGGTCCAGAA
. : . : . : . : . : . :
rJMSF020I18+ AATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTT
rJMSF021I18+ AATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTT
rJMSF051I13+ AATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTT
____________________________________________________________
consensus AATTTGAACTATGTGGCTGATACATTGCAAAAAGAGAAAAATGCTCCAATAACTGAATTT
. : . : . : . : . : . :
rJMSF020I18+ GAGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGT
rJMSF021I18+ GAGNTATCTCACGATGATGCTTCCAATACATGGCATNTTGTGGGATCAGGCCTGCAGCGT
rJMSF051I13+ GAGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGT
____________________________________________________________
consensus GAGATATCTCACGATGATGCTTCCAATACATGGCATGTTGTGGGATCAGGCCTGCAGCGT
. : . : . : . : . : . :
rJMSF020I18+ TTTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTG
rJMSF021I18+ TTTATCCAAATGACAAACTGGAGATATATAGATTNTGAGAGAAGATTTCAACATGTTCNG
rJMSF051I13+ TTTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTG
____________________________________________________________
consensus TTTATCCAAATGACAAACTGGAGATATATAGATTCTGAGAGAAGATTTCAACATGTTCTG
. : . : . : . : . : . :
rJMSF020I18+ GAGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTC
rJMSF021I18+ GAGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGNGTAAAGGAAGGCGACACTGTC
rJMSF051I13+ GAGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTC
____________________________________________________________
consensus GAGGCAAGTGGTGTAAATAAATCTCTCATAAAACTTGGTGTAAAGGAAGGCGACACTGTC
. : . : . : . : . : . :
rJMSF020I18+ ATTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGT
rJMSF021I18+ ATTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGT
rJMSF051I13+ ATTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGT
____________________________________________________________
consensus ATTGTTGGGGATATGGAGATGGTATGGAATGATGGCCCAAGCAACTCAGGTCCTACAAGT
. : . : . : . : . : . :
rJMSF020I18+ AGGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCA
rJMSF021I18+ AGGAGGAAGTGGGCGACTGAACGGANTCAGTGACTTTCATGCTCGCCATTTCCTANCCCA
rJMSF051I13+ AGGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCA
____________________________________________________________
consensus AGGAGGAAGTGGGCGACTGAACGGATTCAGTGACTTTCATGCTCGCCATTTCCTAACCCA
. : . : . : . : . : . :
rJMSF020I18+ TTTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCAC
rJMSF021I18+ TNTTAGTNTAANTTGTTCGTTTAAAGGCATAACTTGTGANGGNTTGGTCATGCCTACCAC
rJMSF051I13+ TTTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCAC
____________________________________________________________
consensus TTTTAGTCTAAGTTGTTCGTTTAAAGGCATAACTTGTGAAGGTTTGGTCATGCCTACCAC
. : . : . : . : . : . :
rJMSF020I18+ TAAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTT
rJMSF021I18+ TAAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTT
rJMSF051I13+ TAAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTT
____________________________________________________________
consensus TAAGAATCAATCCGCAAAATGGTGAACTCAATCACGGTTCCAGCTGCAATTTGGTATCTT
. : . : . : . : . : . :
rJMSF020I18+ CGTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAG
rJMSF021I18+ CGTGNCGGATGTTCTTTGAANCAGTAGTGCATGGGCGGACAGGACAAATGAGTAGTCCAG
rJMSF051I13+ CGTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAG
____________________________________________________________
consensus CGTGACGGATGTTCTTTGAAACAGTCGTGCATGGGCGGACAGGACAAATGAGTAGTCCAG
. : . : . : . : . : . :
rJMSF020I18+ TGAGTTCACTATAACCATATCTCTGTTTGATAC
rJMSF021I18+ TGAGTTCACTATANCCAT
rJMSF051I13+ TGAGTTCACTATAACCATATCTCTGTTTGATACAGTATTTATAGCTATAGTTGTAATTTT
____________________________________________________________
consensus TGAGTTCACTATAACCATATCTCTGTTTGATACAGTATTTATAGCTATAGTTGTAATTTT