Contig 005844:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN031I14Sequence597005844 (10)ref|XP_010556278.1|115PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF023L19Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF030H24Sequence672005844 (10)ref|XP_010556278.1|115PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]618005844 (10)ref|XP_010556278.1|109PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF033N06Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]687005844 (10)ref|XP_006357191.1|117PREDICTED: uncharacterized protein LOC102602305 [Solanum tuberosum]
JMSF051C08Sequence677005483 (2)ref|XP_008452860.1|5e-126PREDICTED: transcription initiation factor TFIID subunit 5 [Cucumis melo]730005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]
JMSF051F04Sequence679005844 (10)ref|XP_010556278.1|114PREDICTED: uncharacterized protein LOC104825617 [Tarenaya hassleriana]704005844 (10)emb|CDP16686.1|2e-27unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF030H24- GAGAGCCTCTAG
                      ____________________________________________________________
consensus GAGAGCCTCTAG
 
. : . : . : . : . : . :
JMFN031I14- AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF030H24- CCATTTCCAGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
rJMSF023L19+ TTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTTTTCTC
JMSF023L19- TTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF051F04- AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
JMSF033N06- AGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
rJMSF051C08+ TC
                      ____________________________________________________________
consensus CCATTTCCAGTTTTCAGAAATGGCTGCATCTTCCATAGCCACTCTCTTCTCCTTCTTCTC
 
. : . : . : . : . : . :
JMFN031I14- CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF030H24- CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF023L19+ CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF023L19- CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF051F04- CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
JMSF033N06- CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF033N06+ TCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
rJMSF051C08+ CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
                      ____________________________________________________________
consensus CCCCTCCAAACCGCCATCCCCTAAAGCTCCTCCGCTTCAGCTGTCTCTCTCCTCCGACTA
 
. : . : . : . : . : . :
JMFN031I14- TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF030H24- TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF023L19+ TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF023L19- TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF051F04- TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
JMSF033N06- TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF033N06+ TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF051C08+ TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
rJMSF051F04+ AAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
                      ____________________________________________________________
consensus TTCCTCTTCTATCTCGAAAAGCCACAACGATGGTTGGGCCCCGCTAGTGAAAACCGCCGA
 
. : . : . : . : . : . :
JMFN031I14- TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF030H24- TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF023L19+ TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF023L19- TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF051F04- TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
JMSF033N06- TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF033N06+ TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF051C08+ TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF030H24+ GCAATTCCGAGCTCATGTCCGTCGTCTG
rJMSF051F04+ TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
                      ____________________________________________________________
consensus TAACCAACAGCAGTATCCATCGCCGCTATCCGGCAATTCCGAGCTCATGTCCGTCGTCTG
 
. : . : . : . : . : . :
JMFN031I14- CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF030H24- CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF023L19+ CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF023L19- CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF051F04- CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
JMSF033N06- CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF033N06+ CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF051C08+ CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF030H24+ CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
rJMSF051F04+ CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
                      ____________________________________________________________
consensus CCCGTCTCTGGCGCACGCCAACACCCTCTTCTTCTCTTCCTACAACGTCGAGCTCATTGT
 
. : . : . : . : . : . :
JMFN031I14- GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF030H24- GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF023L19+ GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF023L19- GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF051F04- GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
JMSF033N06- GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF033N06+ GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF051C08+ GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF030H24+ GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
rJMSF051F04+ GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
                      ____________________________________________________________
consensus GGATGGGGACGAGCCGGAGGAGCGGTTGCTCAACCGCTTCCGCAGAGAGGTGATGAAAAC
 
. : . : . : . : . : . :
JMFN031I14- CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF030H24- CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF023L19+ CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF023L19- CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF051F04- CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
JMSF033N06- CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF033N06+ CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF051C08+ CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF030H24+ CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
rJMSF051F04+ CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
                      ____________________________________________________________
consensus CGGACTGATTCAAGAGTGCAAGCGCAGGCGATACTTCGAGAACAAGCAGGAGGAGAAGAA
 
. : . : . : . : . : . :
JMFN031I14- GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF030H24- GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF023L19+ GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF023L19- GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF051F04- GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
JMSF033N06- GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF033N06+ GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF051C08+ GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF030H24+ GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
rJMSF051F04+ GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
                      ____________________________________________________________
consensus GCGCAAGTCCCGTGAAGCCGCCAGGCGCAATCGTCGACGACGAAGAGGTCCCTTTGAGGA
 
. : . : . : . : . : . :
JMFN031I14- TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF030H24- TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF023L19+ TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF023L19- TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF051F04- TAGGCGAATGGCCTTTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
JMSF033N06- TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF033N06+ TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF051C08+ TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF030H24+ TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
rJMSF051F04+ TAGGCGAATGGCCTTTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
                      ____________________________________________________________
consensus TAGGCGAATGGCCTCTGCAAACAACAATGGCGATGGTAAAAAAGAGGAAGAAGACGACGA
 
. : . : . : . : . : . :
JMFN031I14- CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACNAGGATTC
JMSF030H24- CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF023L19+ CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF023L19- CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF051F04- CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
JMSF033N06- CNATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF033N06+ CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF051C08+ CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF030H24+ CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
rJMSF051F04+ CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
                      ____________________________________________________________
consensus CAATTGGGAACTTCCCGACAAAGACGTGCCCTTTTGATTGAATTTATTTTACAAGGATTC
 
. : . : . : . : . : . :
JMFN031I14- TGGT
JMSF030H24- TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
rJMSF023L19+ TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
JMSF023L19- TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
JMSF051F04- TGGTTGACTTTGCTTTTGAAGANGCTTCTTATCCCTGTAAGGNTTCATGTCCTCTAATCT
JMSF033N06- TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF033N06+ TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF051C08+ TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF030H24+ TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
rJMSF051F04+ TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
                      ____________________________________________________________
consensus TGGTTGACTTTGCTTTTGAAGAGGCTTCTTATCCCTGTAAGGTTTCATGTCCTCTAATCT
 
. : . : . : . : . : . :
rJMSF023L19+ TCCCAATGCACTTAACTCTCTCTATT
JMSF023L19- TCCCAATGCACTTAACTCTCTCTATT
JMSF051F04- TCCCAATGCACTTAACTCTCTCTATT
JMSF033N06- TCCCAATGCACTTAACTCTCTCTATT
rJMSF033N06+ TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF051C08+ TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF030H24+ TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
rJMSF051F04+ TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
                      ____________________________________________________________
consensus TCCCAATGCACTTAACTCTCTCTATTTTTCTGTGATTTCTTCTTAATGCACATGTAATTG
 
. : . : . : . : . : . :
rJMSF033N06+ CTTGCTTTTCTTGTTGCTTTCTGAGTTGT
rJMSF051C08+ CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
rJMSF030H24+ CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
rJMSF051F04+ CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
                      ____________________________________________________________
consensus CTTGCTTTTCTTGTTGCTTTCTGAGTTGTTAGACATCATCTAGTATCTTATGTAAAATAG
 
. : . : . : . : . : . :
rJMSF051C08+ TTGATGT
rJMSF030H24+ TTGATGTTGTAAGTCCATCATAAGACCAATGAC
rJMSF051F04+ TTGATGTTGTAAGTCCATCATAAGACCAATGACATGATGTTTCATCCTTACAATGTAAGG
                      ____________________________________________________________
consensus TTGATGTTGTAAGTCCATCATAAGACCAATGACATGATGTTTCATCCTTACAATGTAAGG