Contig 005843:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF021E17Sequence660002478 (3)ref|XP_006409189.1|5e-35hypothetical protein EUTSA_v100228211mg, partial [Eutrema salsugineum] gb|ESQ506758005843 (2)dbj|BAE96757.1|2e-94MAP kinase homolog [Nicotiana tabacum]
JMSF051C20Sequence656002478 (3)ref|XP_006409189.1|3e-34hypothetical protein EUTSA_v100228211mg, partial [Eutrema salsugineum] gb|ESQ506696005843 (2)dbj|BAE96757.1|5e-77MAP kinase homolog [Nicotiana tabacum]

Alignment

This contig is upended


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rJMSF021E17+                               AATGGACAGTTCATGACTGAATATGTAGTCACTCGTTGG
                      ____________________________________________________________
consensus                                  AATGGACAGTTCATGACTGAATATGTAGTCACTCGTTGG
 
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rJMSF021E17+          TATCGAGCACCAGAGCTACTTCTTTCGTGTGATAACTATGGAACCTCGATTGATGTGTGG
rJMSF051C20+                                  TCGTGTGATAACTATGGAACCTCGATTGATGTGTGG
                      ____________________________________________________________
consensus             TATCGAGCACCAGAGCTACTTCTTTCGTGTGATAACTATGGAACCTCGATTGATGTGTGG
 
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rJMSF021E17+          TCTGTTGGGTGCATATTTGGTGAGCTTCTTGGCAGGAAACCCCTCTTTCAAGGGTCCGAG
rJMSF051C20+          TCTGTTGGGTGCATATTTGGTGAGCTTCTTGGCAGGAAACCCCTCTTTCAAGGGTCCGAG
                      ____________________________________________________________
consensus             TCTGTTGGGTGCATATTTGGTGAGCTTCTTGGCAGGAAACCCCTCTTTCAAGGGTCCGAG
 
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rJMSF021E17+          TGCCTCAACCAGCTTAAACTCATCATCAATGTTCTTGGTTCCCAACCCGAAGCTCATCTC
rJMSF051C20+          TGCCTCAACCAGCTTAAACTCATCATCAATGTTCTTGGTTCCCAACCCGAAGCTCATCTC
                      ____________________________________________________________
consensus             TGCCTCAACCAGCTTAAACTCATCATCAATGTTCTTGGTTCCCAACCCGAAGCTCATCTC
 
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rJMSF021E17+          CAGTTTATAGACAACTCGAAGGCCAAGAAATTCGTTCGATCCCTCCCATTCTCCCGAGGA
rJMSF051C20+          CAGTTTATAGACAACTCGAAGGCCAAGAAATTCGTTCGATCCCTCCCATTCTCCCGAGGA
                      ____________________________________________________________
consensus             CAGTTTATAGACAACTCGAAGGCCAAGAAATTCGTTCGATCCCTCCCATTCTCCCGAGGA
 
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rJMSF021E17+          ATCCACTTCTCTTCTCTGTTCCCCCAGGCCGATCCTTTGGCGTTAGACTTGTTGCAGCAG
rJMSF051C20+          ATCCACTTCTCTTCTCTGTTCCCCCAGGCCGATCCTTTGGCGTTAGACTTGTTGCAGCAG
                      ____________________________________________________________
consensus             ATCCACTTCTCTTCTCTGTTCCCCCAGGCCGATCCTTTGGCGTTAGACTTGTTGCAGCAG
 
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rJMSF021E17+          ATGCTTGTTTTTGATCCATCGAAACGAATCACAGTTACAGAAGCTCTCCATCACCCTTAC
rJMSF051C20+          ATGCTTGTTTTTGATCCATCGAAACGAATCACAGTTACAGAAGCTCTCCATCACCCTTAC
                      ____________________________________________________________
consensus             ATGCTTGTTTTTGATCCATCGAAACGAATCACAGTTACAGAAGCTCTCCATCACCCTTAC
 
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rJMSF021E17+          CTTTCAGACCTTTACGATCCGCTTCATAACCTGCCTGCCCGCTTTCCTCTAAATCTCGAC
rJMSF051C20+          CTTTCAGACCTTTACGATCCGCTTCATAACCTGCCTGCCCGCTTTCCTCTAAATCTCGAC
                      ____________________________________________________________
consensus             CTTTCAGACCTTTACGATCCGCTTCATAACCTGCCTGCCCGCTTTCCTCTAAATCTCGAC
 
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rJMSF021E17+          ATTGATGAGAGCATTGGAGAACCCGTGATTAGAGAGTTGATGCTGAGAGAGATGCTTTAT
rJMSF051C20+          ATTGATGAGAGCATTGGAGAACCCGTGATTAGAGAGTTGATGCTGAGAGAGATGCTTTAT
                      ____________________________________________________________
consensus             ATTGATGAGAGCATTGGAGAACCCGTGATTAGAGAGTTGATGCTGAGAGAGATGCTTTAT
 
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rJMSF021E17+          TACCATCCCGAAGCTGCTTACGCAGACGCATTTTACTAATTCTTTTAATTCAAGAAGATG
rJMSF051C20+          TACCATCCCGAAGCTGCTTACGCAGACGCATTTTACTAATTCTTTTAATTCAAGAAGATG
                      ____________________________________________________________
consensus             TACCATCCCGAAGCTGCTTACGCAGACGCATTTTACTAATTCTTTTAATTCAAGAAGATG
 
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rJMSF021E17+          AATAAGAAGAAGCCTGCAGGATATATGAGGAGCAGAAGAGGATTCTCTTATCAATCTCAC
rJMSF051C20+          AATAAGAAGAAGCCTGCAGGATATATGAGGAGCAGAAGAGGATTCTCTTATCAATCTCAC
                      ____________________________________________________________
consensus             AATAAGAAGAAGCCTGCAGGATATATGAGGAGCAGAAGAGGATTCTCTTATCAATCTCAC
 
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rJMSF021E17+          CAAGTTTAGGACTTTGAATGCATCATTGGATGATTCTGTTTATCTTAGTGCTTGTTCTTT
rJMSF051C20+          CAAGTTTAGGACTTTGAATGCATCATTGGATGATTCTGTTTATCTTAGNGCTTGTTCTTT
                      ____________________________________________________________
consensus             CAAGTTTAGGACTTTGAATGCATCATTGGATGATTCTGTTTATCTTAGTGCTTGTTCTTT
 
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rJMSF021E17+          TCTTTTTTAAAAAAAAATAAAAAAAATCTATGCATTGTGTCAATGAATGTCTGAGAACC 
rJMSF051C20+          TCTTTTTTAAAAAAAAATAAAAAAAATCTATGCATNGTGTCAATGAATGTCTGAGAACCT
                      ____________________________________________________________
consensus             TCTTTTTTAAAAAAAAATAAAAAAAATCTATGCATTGTGTCAATGAATGTCTGAGAACCT