Contig 005842:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF051B06Sequence667008109 (5)ref|XP_009783011.1|1e-63PREDICTED: S-linalool synthase-like, partial [Nicotiana sylvestris]791005842 (3)ref|XP_009593582.1|3e-40PREDICTED: (E,E)-geranyllinalool synthase [Nicotiana tomentosiformis]
JMSF052B06Sequence707001007 (2)ref|XP_009626440.1|335PREDICTED: uncharacterized protein LOC104117142 [Nicotiana tomentosiformis]766005842 (3)ref|XP_009593582.1|2e-28PREDICTED: (E,E)-geranyllinalool synthase [Nicotiana tomentosiformis]
JMSF052J18Sequence574008109 (5)emb|CBI38331.3|2e-54unnamed protein product [Vitis vinifera]949005842 (3)ref|XP_009593582.1|2e-55PREDICTED: (E,E)-geranyllinalool synthase [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF052J18+                  GGGNAAGTACANGGAGCCAANCAGGATATAGACCCACCATGGAACCAGTATC
                      ____________________________________________________________
consensus                     GGGNAAGTACANGGAGCCAANCAGGATATAGACCCACCATGGAACCAGTATC
 
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rJMSF052J18+          TTGAAACTGGCATGGTATCCATTGCTGCCGACACTGTTCTTCTTCCTGCGGCTTGTTTCT
                      ____________________________________________________________
consensus             TTGAAACTGGCATGGTATCCATTGCTGCCGACACTGTTCTTCTTCCTGCGGCTTGTTTCT
 
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rJMSF052J18+          TAACTCCTAGCTTGCCTACTCACAAAATGAAACCTGCTTTCTACGAGGATGCCACAAAGC
rJMSF051B06+                                                        GGATGCCACNAAGC
                      ____________________________________________________________
consensus             TAACTCCTAGCTTGCCTACTCACAAAATGAAACCTGCTTTCTACGAGGATGCCACAAAGC
 
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rJMSF052J18+          TGCTCATGACTGCCACCCGTTTATTGAACGACATCCAAAGCTATCAAAAGG-AAAAGGAG
rJMSF052B06+                    TGCCNCCCGTTTATTGAACGACATCCAAAGCTATCAAAAGGAAAAAGGAG
rJMSF051B06+          TGCTCATGACTGCCACCCGTTTATTGAACGACATCCAAAGCTATCAAAAGG-AAAAGGAG
                      ____________________________________________________________
consensus             TGCTCATGACTGCCACCCGTTTATTGAACGACATCCAAAGCTATCAAAAGG-AAAAGGAG
 
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rJMSF052J18+          GTTGGGAAAATGAACTATGTATTGCTACACTTGAACGAACATCCAGAAGGACATATAGAG
rJMSF052B06+          GTTGGGAAAATGAACTATGTATTGCTACACTTGAACGAACATCCAGAAGGACATATAGAG
rJMSF051B06+          GTTGGGAAAATGAACTATGTATTGCTACACTTGAACGAACATCCAGAAGGACATATAGAG
                      ____________________________________________________________
consensus             GTTGGGAAAATGAACTATGTATTGCTACACTTGAACGAACATCCAGAAGGACATATAGAG
 
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rJMSF052J18+          GATTCAATCGCCTACGTTAACGACATGGTTGACAAGATGAGGAAACAATTTCTCCAACAT
rJMSF052B06+          GATTCAATCGCNTACGTTAACGACATGGTTGACAAGATGAGGAAACAATTTCTCCAACAT
rJMSF051B06+          GATTCAATCGCCTACGTTAACGACATGGTTGACAAGATGAGGAAACAATTTCTCCAACAT
                      ____________________________________________________________
consensus             GATTCAATCGCCTACGTTAACGACATGGTTGACAAGATGAGGAAACAATTTCTCCAACAT
 
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rJMSF052J18+          GTACTCATGACGACAGATGATGATGGTGATGACAACTACAATAATATGCCCAAATCATGC
rJMSF052B06+          GTACTCATGACGACAGATGATGATGGTGATGACAACTACAATAATATGCCCAAATCATGC
rJMSF051B06+          GTACTCATGACGACAGATGATGATGGTGATGACAACTACAATAATATGCCCAAATCATGC
                      ____________________________________________________________
consensus             GTACTCATGACGACAGATGATGATGGTGATGACAACTACAATAATATGCCCAAATCATGC
 
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rJMSF052J18+          AAACTTTTTCACCTTTCTTGCTTCAAAGTGTTCCAGATGTTCTTCAACTCCTACAACCTT
rJMSF052B06+          AAACTTTTTCACCTTTCTTGCTTCAAAGTGTTCCAGATGTTCTTCAACTCCTACAACCTC
rJMSF051B06+          AAACTTTTTCACCTTTCTTGCTTCAAAGTGTTCCAGATGTTCTTCAACTCCTACAACCTC
                      ____________________________________________________________
consensus             AAACTTTTTCACCTTTCTTGCTTCAAAGTGTTCCAGATGTTCTTCAACTCCTACAACCTC
 
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rJMSF052J18+          TTCGATTCCAAGGCGGACCTAATGCAAGAAATCATGAAAGCTTTCTACATTCCTTTCGAA
rJMSF052B06+          TTCGATTCCAAGGCGGACCTAATGCAAGAAATCATGAAAGCTTTCTACATTCCTTTCGAA
rJMSF051B06+          TTCGATTCCAAGGCGGACCTAATGCAAGAAATCATGAAAGCTTTCTACATTCCTTTCGAA
                      ____________________________________________________________
consensus             TTCGATTCCAAGGCGGACCTAATGCAAGAAATCATGAAAGCTTTCTACATTCCTTTCGAA
 
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rJMSF052J18+          CAAGATCAACAACCATCCAATAATCCTCTAATAATAAAGGTCATAAAACCCCTCCCAGTG
rJMSF052B06+          CAAGATCAACAACCATCCAATAATCCTCTAATAATAAAGGTCATAAAACCCCTCCCAGTG
rJMSF051B06+          CAAGATCAACAACCATCCAATAATCCTCTAATAATAAAGGTCATAAAACCCCTCCCAGTG
                      ____________________________________________________________
consensus             CAAGATCAACAACCATCCAATAATCCTCTAATAATAAAGGTCATAAAACCCCTCCCAGTG
 
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rJMSF052J18+          CTGCCACCCCTGGAGAGGAGCAGTAGTAGTGAAGGTGCCAAGGTTTCTGCTTTTTTGGGC
rJMSF052B06+          CTGCCACCCCTGGAGAGGAGCAGTAGTAGTGAAGGTGCCAAGGTTTCTGCTTCTTTGGGC
rJMSF051B06+          CTGCCACCCCTGGAGAGGAGCAGTAGTAGTGAAGGTGCCAAGGTTTCTGCTTCTTTGGGC
                      ____________________________________________________________
consensus             CTGCCACCCCTGGAGAGGAGCAGTAGTAGTGAAGGTGCCAAGGTTTCTGCTTCTTTGGGC
 
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rJMSF052J18+          CCAGCTGCAACCTTAAAGCACAAGAATAAGGTTGCCATAAGCTTCATTAGAAAACAGGTT
rJMSF052B06+          CCAGCTGCAACCTTAAAGCACAAGAATAAGGTTGCCATAAGCTTCATTAGAAAACAGGTT
rJMSF051B06+          CCAGCTGCAACCTTAAAGCACAAGAATAAGGTTGCCATAAGCTTCATTAGAAAACAGGTT
                      ____________________________________________________________
consensus             CCAGCTGCAACCTTAAAGCACAAGAATAAGGTTGCCATAAGCTTCATTAGAAAACAGGTT
 
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rJMSF052J18+          CCCAGAAACTGTTCTTTGGGTTTCTACAGCCCTAAACCATGCACCCCTGCAAAACTCAAG
rJMSF052B06+          CCCAGAAACTGTTCTTTGGGTTTCTACAGCCCTAAACCATGCACCCCTGCAAAACTCAAG
rJMSF051B06+          CCCAGAAACTGTTCTTTGGGTTTCTACAGCCCTAAACCATGCACCCCTGCAAAACTCAAG
                      ____________________________________________________________
consensus             CCCAGAAACTGTTCTTTGGGTTTCTACAGCCCTAAACCATGCACCCCTGCAAAACTCAAG
 
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rJMSF052J18+          TCTTGTTTCATCTAATCCCAAATCATCAAGCTAAGCACCTTAGAATTTAATTTTCGTTTT
rJMSF052B06+          TCTTGTTTCATCTAATCCCAAATCATCAAGCTAAGCACCTTAGAATTTAATTTTCGTTTT
rJMSF051B06+          TCTTGTTTCATCTAATCCCAAATCATCAAGCTAAGCACCTTAGAATTTAATTTTCGTTTT
                      ____________________________________________________________
consensus             TCTTGTTTCATCTAATCCCAAATCATCAAGCTAAGCACCTTAGAATTTAATTTTCGTTTT
 
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rJMSF052J18+          ATATATGTAACATATACTAGTTGTAA-CAAGTA-GTGTATCGTATATATATATTCAGGCC
rJMSF052B06+          ATATATGTAACATATACTAGTTGTAANCAAGTAGGTGTATCGTATATATATATTCAGGCC
rJMSF051B06+          ATATATGTAACATATACTAGTTGTAA-CAAGTA-GTGTATCGTATATATATATTCAGGCC
                      ____________________________________________________________
consensus             ATATATGTAACATATACTAGTTGTAA-CAAGTA-GTGTATCGTATATATATATTCAGGCC
 
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rJMSF052J18+          ATCCAGGGTGGGTGTCCTGGAGGCAAGGAAATTTCGCCTTTGTAGAAAAGTAG       
rJMSF052B06+          ATCCAGGGTGGGTGTCCTGGAGGCAAGGAAATTTCGCCTTTGTAGAAAAGTAG       
rJMSF051B06+          ATCCAGGGTGGGTGTCCTGGAGGCAAGGAAATTTCGCCTTTGTAGAAAAGTAGTGTATCA
                      ____________________________________________________________
consensus             ATCCAGGGTGGGTGTCCTGGAGGCAAGGAAATTTCGCCTTTGTAGAAAAGTAGTGTATCA