Contig 005840:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF050L18Sequence690002472 (3)ref|XP_009623873.1|5e-85PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos763005840 (3)ref|XP_010258660.1|1e-95PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nelumbo nucifera]
JMSF051L18Sequence597005840 (3)ref|XP_009623873.1|2e-77PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos
JMSF052B15Sequence716002472 (3)ref|XP_009623873.1|8e-95PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nicotiana tomentos889005840 (3)ref|XP_010258660.1|1e-122PREDICTED: suppressor of mec-8 and unc-52 protein homolog 2 [Nelumbo nucifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF052B15+ TCAATTCCATCATCTGAGCCACCTCATGGATGGCAACAAGTGAATGGGTATGATGC
                      ____________________________________________________________
consensus TCAATTCCATCATCTGAGCCACCTCATGGATGGCAACAAGTGAATGGGTATGATGC
 
. : . : . : . : . : . :
rJMSF052B15+ TGTTCAAGCACAGGCCATGGCTGGTGTGTACCCATCAGAGTGGCAGGATTACCAATATGC
                      ____________________________________________________________
consensus TGTTCAAGCACAGGCCATGGCTGGTGTGTACCCATCAGAGTGGCAGGATTACCAATATGC
 
. : . : . : . : . : . :
rJMSF052B15+ TGAGCAAGTGGCCTACCCTGATCAATACCTCCAGCAAAACTTACAGACTTATGATATGCA
rJMSF050L18+ CTGATCAATACCTCCAGCNAAACTTACAGACTTTTGATATGCA
                      ____________________________________________________________
consensus TGAGCAAGTGGCCTACCCTGATCAATACCTCCAGCAAAACTTACAGACTTTTGATATGCA
 
. : . : . : . : . : . :
rJMSF051L18+ ACAAGAAGAAAAGGATAGNGG
rJMSF052B15+ AACTGGTTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
rJMSF050L18+ AACTGGNTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
                      ____________________________________________________________
consensus AACTGGTTTAAACATTCAGCAAGACCCGCGTTTTATGACACAAGAAGAAAAGGATAGAGG
 
. : . : . : . : . : . :
rJMSF051L18+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
rJMSF052B15+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
rJMSF050L18+ CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
                      ____________________________________________________________
consensus CTTAGGGTCAGTGTTTAAGAGAGATGATCAGAGGCTTCTACAATTGAGAGAGAGAGATGC
 
. : . : . : . : . : . :
rJMSF051L18+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
rJMSF052B15+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
rJMSF050L18+ TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
                      ____________________________________________________________
consensus TCGGGAGAAGGATCCCAATTTTGTATCTGAGAGCTATTCCGAGTGCTATCCTGGTTACCA
 
. : . : . : . : . : . :
rJMSF051L18+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
rJMSF052B15+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
rJMSF050L18+ AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
                      ____________________________________________________________
consensus AGAGTACAATCGTGAGATTGTTGACAGTGATGATGAAGCTGATTTGTCAAAGATGGATAT
 
. : . : . : . : . : . :
rJMSF051L18+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGNCCGAAGAGGAGTGGGC
rJMSF052B15+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
rJMSF050L18+ GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
                      ____________________________________________________________
consensus GGGCGGACGTGCAAAAGGCCGACTTCATCGGTGGGACTTTGAGACCGAAGAGGAGTGGGC
 
. : . : . : . : . : . :
rJMSF051L18+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
rJMSF052B15+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
rJMSF050L18+ AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
                      ____________________________________________________________
consensus AACCTACAATGAACAAAAGGAAGCAATGCCGAAAGCTGCATTCCAGTTTGGTGTGAAGAT
 
. : . : . : . : . : . :
rJMSF051L18+ GCANGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
rJMSF052B15+ GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
rJMSF050L18+ GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
                      ____________________________________________________________
consensus GCAAGACGGGAGGAAGACAAGAAAGCAAAACAAAGACCAGAAACTCACTAATGAGCTCCA
 
. : . : . : . : . : . :
rJMSF051L18+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
rJMSF052B15+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
rJMSF050L18+ TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
                      ____________________________________________________________
consensus TAAGATCAACAAAATCCTATCCAGAAAGAAGATGGAGGAGAAAGGGGATATCAACGAGGA
 
. : . : . : . : . : . :
rJMSF051L18+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
rJMSF052B15+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
rJMSF050L18+ TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
                      ____________________________________________________________
consensus TGACTCGCACCCGGGAAAGAAACTTCGAATTTGATGTTCAAACAGTTTGATTTCTTGTAT
 
. : . : . : . : . : . :
rJMSF051L18+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
rJMSF052B15+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
rJMSF050L18+ GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
                      ____________________________________________________________
consensus GATTTTGTAATGAGAAAAGGTCTCTTTAGTTTCTGATAAACTACCTTGGATTAGGTAATG
 
. : . : . : . : . : . :
rJMSF051L18+ CCAGTATTTCTGCAGTGATTGA
rJMSF052B15+ CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
rJMSF050L18+ CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
                      ____________________________________________________________
consensus CCAGTATTTCTGCAGTGATTGATGAAGTTAGTAGGTTCAAGAGATTGACCTTCCTTTTTC
 
. : . : . : . : . : . :
rJMSF052B15+ ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAAT
rJMSF050L18+ ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAATGGTACTA
                      ____________________________________________________________
consensus ACTGAAAGGCTTTGTGCAAAGCCTTTAGCATAACAAGGACCTCATAATGTAATGGTACTA