| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF007K20 | Sequence | 350 | 005309 (7) | ref|XP_009779530.1| | 2e-20 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] | 743 | 005838 (5) | ref|XP_009797160.1| | 6e-93 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] |
| JMSF026B18 | Sequence | 638 | 005309 (7) | ref|XP_004166160.1| | 3e-91 | PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus] | 709 | 005838 (5) | ref|XP_006361630.1| | 2e-95 | PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum] |
| JMSF045N21 | Sequence | 741 | 005309 (7) | ref|XP_009779530.1| | 4e-91 | PREDICTED: probable methionine--tRNA ligase [Nicotiana sylvestris] | 711 | 005838 (5) | ref|XP_006361630.1| | 1e-93 | PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum] |
| JMSF048I16 | Sequence | 682 | 005309 (7) | ref|XP_011041943.1| | 5e-102 | PREDICTED: probable methionine--tRNA ligase [Populus euphratica] ref|XP_01104194 | 799 | 005838 (5) | ref|XP_006361630.1| | 4e-114 | PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum] |
| JMSF050H23 | Sequence | 677 | 005309 (7) | ref|XP_004166160.1| | 1e-89 | PREDICTED: probable methionine--tRNA ligase-like, partial [Cucumis sativus] | 728 | 005838 (5) | ref|XP_006361630.1| | 9e-96 | PREDICTED: probable methionine--tRNA ligase-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
rJMSF007K20+ ATCTCATTCCTCAACTAAGGCTTTAGCAGAGA
____________________________________________________________
consensus ATCTCATTCCTCAACTAAGGCTTTAGCAGAGA
. : . : . : . : . : . :
rJMSF007K20+ AGGTCGGAAACTATTTGGATCAATATATTGAAGCCATGGAAAAGGTAAAATTGAAGCAAG
____________________________________________________________
consensus AGGTCGGAAACTATTTGGATCAATATATTGAAGCCATGGAAAAGGTAAAATTGAAGCAAG
. : . : . : . : . : . :
rJMSF007K20+ CCTTGAAGATTGCCATGTCTCTTTCTGGTGAAGGAAATGCTTATTTGCAAGAGAGCCAAT
____________________________________________________________
consensus CCTTGAAGATTGCCATGTCTCTTTCTGGTGAAGGAAATGCTTATTTGCAAGAGAGCCAAT
. : . : . : . : . : . :
rJMSF007K20+ TTTGGAAGCTTTACAAGGAAGATAAACCTTCATGTTCCGTAGTTATGAGAACTGCTGCTG
____________________________________________________________
consensus TTTGGAAGCTTTACAAGGAAGATAAACCTTCATGTTCCGTAGTTATGAGAACTGCTGCTG
. : . : . : . : . : . :
rJMSF007K20+ GTCTAGTTTATCTACTCGCTTTCCTTTTAGAGCCTTTTATGCCTTCTTTTTCACGTGAGG
____________________________________________________________
consensus GTCTAGTTTATCTACTCGCTTTCCTTTTAGAGCCTTTTATGCCTTCTTTTTCACGTGAGG
. : . : . : . : . : . :
rJMSF007K20+ TATTCAAGCAGTTAAACTTGCCTGAATCATGGCTTTCACTTTNTGATGAAAATGGTGACN
____________________________________________________________
consensus TATTCAAGCAGTTAAACTTGCCTGAATCATGGCTTTCACTTTNTGATGAAAATGGTGACN
. : . : . : . : . : . :
rJMSF007K20+ TTGAAAGGGCTAAAAAGCCCTGGGATATTTTACCTGCTGGTCACAAAATTGGAACACCTG
____________________________________________________________
consensus TTGAAAGGGCTAAAAAGCCCTGGGATATTTTACCTGCTGGTCACAAAATTGGAACACCTG
. : . : . : . : . : . :
rJMSF007K20+ TGCCATTATTCAAGGAATTGAAAGATGAAGAAGTTGAAATGTACCGGGAGAAGTTTGCTG
rJMSF048I16+ TGTACCGGGAGAAGTTTGCTG
____________________________________________________________
consensus TGCCATTATTCAAGGAATTGAAAGATGAAGAAGTTGAAATGTACCGGGAGAAGTTTGCTG
. : . : . : . : . : . :
rJMSF007K20+ GAAGTCAAGCTGACAGGACCTTGAGGGTAGAAGCTGAAGCAAAGAAGATTACTGAACAAT
rJMSF048I16+ GAAGTCAAGCTGATAGGACCTTGAGGGTAGAAGCTGAAGCAAAGAAGATTACTGAACAAT
____________________________________________________________
consensus GAAGTCAAGCTGATAGGACCTTGAGGGTAGAAGCTGAAGCAAAGAAGATTACTGAACAAT
. : . : . : . : . : . :
rJMSF007K20+ TGAATAAAGCAAAAATTTCAAGTGAAAAAATA---AAGGAGCGATCAACAAAATCAGCTC
rJMSF026B18+ AAGGAACGATCAACAAAATCAGCTC
rJMSF048I16+ TGAATAAAGCAAAAATTTCAAATGAAAAAACAAAGAAGGAACGATCAACAAAATCAGCTC
rJMSF045N21+ ATCAGCTC
rJMSF050H23+ ATCAGCTC
____________________________________________________________
consensus TGAATAAAGCAAAAATTTCAAGTGAAAAAATAAAGAAGGAACGATCAACAAAATCAGCTC
. : . : . : . : . : . :
rJMSF007K20+ AAGCCAAGTCGAAGGCTGGAGCATCTGTCT
rJMSF026B18+ AAGCCAAGTCGAAGGCTGGAGCATCTGTCTCTGCTGAAGCTGAAGTATCCATTAGCCGAC
rJMSF048I16+ AAGCCAAGTCGAAGGCTGGAGCATCTGTCTCTGCTGAAGCTGAAGTATCCATTAGCCGAC
rJMSF045N21+ AAGCCAAGTCGAAGGCTGGAGCATCTGTCTCTGCTGAAGCTGAAGTATCCATTAGCCGAC
rJMSF050H23+ AAGCCCAGTCGAAGGCTGGAGCATCTGTCTCTGCTGAAGCTGAAGTATCCATTAGCCGAC
____________________________________________________________
consensus AAGCCAAGTCGAAGGCTGGAGCATCTGTCTCTGCTGAAGCTGAAGTATCCATTAGCCGAC
. : . : . : . : . : . :
rJMSF026B18+ TTGATATCCGTGTTGGTCTTATCAAGAAAGCCCAAAAGCATCCTGATGCTGATTCTCTGT
rJMSF048I16+ TTGATATCCGTGTTGGTCTTATCAAGAAAGCCCAAAAGCATCCTGATGCTGATTCTCTGT
rJMSF045N21+ TTGATATCCGTGTTGGTCTTATCAAGAAAGCCCAAAAGCATCCTGATGCTGATTCTCTGT
rJMSF050H23+ TTGATATCCGTGTTGGTCTTATCAAGAAAGCCCAAAAGCATCCTGATGCTGATTCTCTGT
____________________________________________________________
consensus TTGATATCCGTGTTGGTCTTATCAAGAAAGCCCAAAAGCATCCTGATGCTGATTCTCTGT
. : . : . : . : . : . :
rJMSF026B18+ ATGTAGAAGAGATTGATGTTGGTGAAGCACAACCTAGGACTGTTGTTAGTGGCCTAGTCA
rJMSF048I16+ ATGTAGAAGAGATTGATGTTGGTGAAGCACAACCTAGGACTGTTGTTAGTGGCCTAGTCA
rJMSF045N21+ ATGTAGAAGAGATTGATGTTGGTGAAGCACAACCTAGGACTGTTGTTAGTGGCCTAGTCA
rJMSF050H23+ ATGTAGAAGAGATTGATGTTGGTGAAGCACAACCTAGGACTGTTGTTAGTGGCCTAGTCA
____________________________________________________________
consensus ATGTAGAAGAGATTGATGTTGGTGAAGCACAACCTAGGACTGTTGTTAGTGGCCTAGTCA
. : . : . : . : . : . :
rJMSF026B18+ AGTATATTCCACTTGAAGAGATGCAGAATCGTAAGGTCTGTGTTCTTTGCAACCTGAAGC
rJMSF048I16+ AGTATATTCCACTTGAAGAGATGCAGAATCGTAAGGTCTGTGTTCTTTGCAACCTGAAGC
rJMSF045N21+ AGTATATTCCACTTGAAGAGATGCAGAATCGTAAGGTCTGTGTTCTTTGCAACCTGAAGC
rJMSF050H23+ AGTATATTCCACTTGAAGAGATGCAGAATCGTAAGGTCTGTGTTCTTTGCAACCTGAAGC
____________________________________________________________
consensus AGTATATTCCACTTGAAGAGATGCAGAATCGTAAGGTCTGTGTTCTTTGCAACCTGAAGC
. : . : . : . : . : . :
rJMSF026B18+ CAGCAACCATGAGGGGTATTAAATCTCAAGCGATGGTTCTTGCTGCTTCTAACAATGATC
rJMSF048I16+ CAGCAACCATGAGGGGTATTAAATCTCAAGCGATGGTTCTTGCTGCTTCTAACAATGATC
rJMSF045N21+ CAGCAACCATGAGGGGTATTAAATCTCAAGCGATGGTTCTTGCTGCTTCTAACAATGATC
rJMSF050H23+ CAGCAACCATGAGGGGTATTAAATCTCAAGCGATGGTTCTTGCTGCTTCTAACAATGATC
____________________________________________________________
consensus CAGCAACCATGAGGGGTATTAAATCTCAAGCGATGGTTCTTGCTGCTTCTAACAATGATC
. : . : . : . : . : . :
rJMSF026B18+ ATACTAAGGTTGAATTGGTGGAGCCACCTCAAGATGCTGGTGTTGGTGAGCGTGTAACAT
rJMSF048I16+ ATACTAAGGTTGAATTGGTGGAGCCACCTCAAGATGCTGGTGTTGGTGAGCGTGTAACAT
rJMSF045N21+ ATACTAAGGTTGAATTGGTGGAGCCACCTCAAGATGCTGGTGTTGGTGAGCGTGTAACAT
rJMSF050H23+ ATACTAAGGTTGAATTGGTGGAGCCACCTCAAGATGCTGGTGTTGGTGAGCGTGTAACAT
____________________________________________________________
consensus ATACTAAGGTTGAATTGGTGGAGCCACCTCAAGATGCTGGTGTTGGTGAGCGTGTAACAT
. : . : . : . : . : . :
rJMSF026B18+ TTTTGGGATTTGAAGGCAAGGCTGACGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAA
rJMSF048I16+ TTTTGGGATTTGAAGGCAAGGCTGACGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAA
rJMSF045N21+ TTTTGGGATTTGAAGGCAAGGCCGACGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAA
rJMSF050H23+ TTTTGGGATTTGAAGGCAAGGCTGACGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAA
____________________________________________________________
consensus TTTTGGGATTTGAAGGCAAGGCTGACGATGTGTTGAACCCCAAGAAGAAGGTTTGGGAAA
. : . : . : . : . : . :
rJMSF026B18+ CCCTACAAGTGGATTTTCACACTAACAAGGAGTTAGTAGCTTGCTACAAGGATATTCCAT
rJMSF048I16+ CCCTACAAGTGGATTTTCACACTAACAAGGAGTTAGTAGCTTGCTACAAGGATATTCCAT
rJMSF045N21+ CCCTACAAGTGGATTTTCACACTAACAAGGAGTTAGTAGCTTGCTACAAGGATATTCCAT
rJMSF050H23+ CCCTACAAGTGGATTTTCACACTAACAAGGAGTTAGTAGCTTGCTACAAGGATATTCCAT
____________________________________________________________
consensus CCCTACAAGTGGATTTTCACACTAACAAGGAGTTAGTAGCTTGCTACAAGGATATTCCAT
. : . : . : . : . : . :
rJMSF026B18+ TCACCACATCAGCTGGGGTGTGCAAGGTTTCATCCATCTCCGAAGGATCTATAAGATAGA
rJMSF048I16+ TCACCACATCAGCTGGGGTGTGCAAGGTTTCATCCATCTCCGAAGGATCTATAAGATAGA
rJMSF045N21+ TCACCACATCAGCTGGGGTGTGCAAGGTTTCATCCATCTCCGAAGGATCTATAAGATAGA
rJMSF050H23+ TCACCACATCAGCTGGGGTGTGCAAGGTTTCATCCATCTCCGAAGGATCTATAAGATAGA
____________________________________________________________
consensus TCACCACATCAGCTGGGGTGTGCAAGGTTTCATCCATCTCCGAAGGATCTATAAGATAGA
. : . : . : . : . : . :
rJMSF026B18+ CGTAGACTTGCATTTTGAAAAGAAAATTCTCTACAGTTTTGTGTATTTCCTATTCTGGTT
rJMSF048I16+ CGTAGACTTGCATTTTGAAAAGAAAATTCTCTACAGTTTTGTGTATTTCCTATTCTGGTT
rJMSF045N21+ CGTAGACTTGCATTTTGAAAAGAAAATTCTCTACAGTTTTGTGTATTTCCTATTCTGGTT
rJMSF050H23+ CGTAGACTTGCATTTTGAAAAGAAAATTCTCTACAGTTTTGTGTATTTCCTATTCTGGTT
____________________________________________________________
consensus CGTAGACTTGCATTTTGAAAAGAAAATTCTCTACAGTTTTGTGTATTTCCTATTCTGGTT
. : . : . : . : . : . :
rJMSF026B18+ TAGTTGTTTTTTCAAAATATCATTAATGATTGTTTAATGGCGATTGTCAATTGCTGCT
rJMSF048I16+ TAGTTGTTTTTTCAAAATATCATTAATGATTGTTTAATGGCGATTGTCAATTGCTGCT
rJMSF045N21+ TAGTTGTTTTTTCAAAATATCATTAATGATTGTTTAATGGCGATTGTCAATTGCTGCTGT
rJMSF050H23+ TAGTTGTTTTTTCAAAATATCATTAATGATTGTTTAATGGCGATTGTCAATTGCTGCTGT
____________________________________________________________
consensus TAGTTGTTTTTTCAAAATATCATTAATGATTGTTTAATGGCGATTGTCAATTGCTGCTGT
. : . : . : . : . : . :
rJMSF045N21+ TCTAA-CCTTATGTTTGCACTCTATAAGGATGTTAC
rJMSF050H23+ TCTAACCCTTATGTTTGCACTCTATAAGGATGTTACCAAAGATGTACTTCCAGAATGCTG
____________________________________________________________
consensus TCTAACCCTTATGTTTGCACTCTATAAGGATGTTACCAAAGATGTACTTCCAGAATGCTG