Contig 005835:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004J23Sequence349004940 (4)422005835 (4)
JMSF035N12Sequence592004994 (17)ref|XP_009594970.1|9e-54PREDICTED: 21 kDa protein-like [Nicotiana tomentosiformis]658005835 (4)ref|XP_009609058.1|2e-24PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2
JMSF050C05Sequence608004940 (4)dbj|BAF46306.1|2e-43ataxin-2 related protein [Ipomoea nil]738005835 (4)ref|XP_009609058.1|2e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X2
JMSF050F18Sequence729004940 (4)dbj|BAF46306.1|1e-58ataxin-2 related protein [Ipomoea nil]779005835 (4)ref|XP_009609056.1|7e-35PREDICTED: polyadenylate-binding protein-interacting protein 4-like isoform X1

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF050C05+ TTCAGATGGTTCCTTCTAC
                      ____________________________________________________________
consensus TTCAGATGGTTCCTTCTAC
 
. : . : . : . : . : . :
rJMSF050C05+ TACCCAACAAATGCGTCTCCTGTTCAACACATGCATGGCATGCCTGTGGGTGTTGGGATT
                      ____________________________________________________________
consensus TACCCAACAAATGCGTCTCCTGTTCAACACATGCATGGCATGCCTGTGGGTGTTGGGATT
 
. : . : . : . : . : . :
rJMSF050C05+ GGACCATCCTATGCTGGACATCAGCCGGTTATGTTTAATCATCAGGTTGCACCAACGCCG
                      ____________________________________________________________
consensus GGACCATCCTATGCTGGACATCAGCCGGTTATGTTTAATCATCAGGTTGCACCAACGCCG
 
. : . : . : . : . : . :
rJMSF050F18+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
rJMSF035N12+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
rJMSF050C05+ CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
                      ____________________________________________________________
consensus CAGCCATATTTTCATCCAAATGGACCTCAGTATGGGCAGCAGATGATAATTGGCCACCCT
 
. : . : . : . : . : . :
rJMSF050F18+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
rJMSF035N12+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
rJMSF050C05+ CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
                      ____________________________________________________________
consensus CGGCAAGTTGTCTACATGCCAACCTACCCTCCTGAAATGCCATACAGGAGAGGAGATTTT
 
. : . : . : . : . : . :
rJMSF050F18+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
rJMSF035N12+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
rJMSF004J23+ TCTCAACGCATTGCTGACTGATGTAG
rJMSF050C05+ TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
                      ____________________________________________________________
consensus TAACTGGACAATTGACACAATATATCCTGCAACTTCTCAACGCATTGCTGACTGATGTAG
 
. : . : . : . : . : . :
rJMSF050F18+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
rJMSF035N12+ GAATAATNTTTTACATTAGACTGCTCAGAACAGTTCTNTAGGGTGAACACCGGGATTGGA
rJMSF004J23+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
rJMSF050C05+ GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
                      ____________________________________________________________
consensus GAATAATTTTTTACATTAGACTGCTCAGAACAGTTCTTTAGGGTGAACACCGGGATTGGA
 
. : . : . : . : . : . :
rJMSF050F18+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF035N12+ TAANGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF004J23+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
rJMSF050C05+ TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
                      ____________________________________________________________
consensus TAATGTATCCAGCCAACAATTCTCTAAGCATTCTGGGCAATGTGGAAAATCAGTCATTTG
 
. : . : . : . : . : . :
rJMSF050F18+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF035N12+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF004J23+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
rJMSF050C05+ AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
                      ____________________________________________________________
consensus AGTCATCATATAATGGTTCTGTAGGATTTAAGCTATAGCTTGATGGAGTCTCTCAAGTGT
 
. : . : . : . : . : . :
rJMSF050F18+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF035N12+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF004J23+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
rJMSF050C05+ TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
                      ____________________________________________________________
consensus TCTTTATCACCGATTTTAATCATCCCCAAAATTGGCTAGGTAGGTTAAGTTTATCTTATA
 
. : . : . : . : . : . :
rJMSF050F18+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
rJMSF035N12+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
rJMSF004J23+ CCATGTNGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTNCACTTCG
rJMSF050C05+ CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
                      ____________________________________________________________
consensus CCATGTTGTACAAGTTCATCTCCCCGGCTAAAGCTGTGGTTGCTGATGCTTTGCACTTCG
 
. : . : . : . : . : . :
rJMSF050F18+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
rJMSF035N12+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTA
rJMSF004J23+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTACCAAGTGTCAT
rJMSF050C05+ ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
                      ____________________________________________________________
consensus ACTTTAGTTAACCTTTCTTATGCTGTTGCTGAATTTACTTTGTCTCTTA-CAAGTGTCAT
 
. : . : . : . : . : . :
rJMSF050F18+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGAT
rJMSF004J23+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATT
rJMSF050C05+ AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGATTGGTCATTACAA
                      ____________________________________________________________
consensus AATGTAAACAACCGTGCCGTCTTTGTTAGATTCATTGTGAATTGGGATTGGTCATTACAA