clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031K13 | Sequence | 568 | 005035 (8) | ref|XP_008456001.1| | 2e-112 | PREDICTED: ATPase family AAA domain-containing protein 1-B-like [Cucumis melo] | 659 | 005831 (7) | ref|XP_007039158.1| | 8e-75 | P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor |
JMFF047E24 | Sequence | 411 | 005035 (8) | gb|KGN57645.1| | 5e-64 | hypothetical protein Csa_3G238110 [Cucumis sativus] | 333 | 005831 (7) | |||
JMSF005J07 | Sequence | 336 | 005035 (8) | ref|XP_010109212.1| | 199 | ATPase family AAA domain-containing protein 1-A [Morus notabilis] gb|EXC21392.1| | 378 | 005831 (7) | ref|XP_011084744.1| | 1e-10 | PREDICTED: ATPase family AAA domain-containing protein 1 [Sesamum indicum] |
JMSF016M02 | Sequence | 201 | 005035 (8) | emb|CDY19035.1| | 6e-21 | BnaC01g20330D [Brassica napus] | 664 | 005831 (7) | ref|XP_007039158.1| | 3e-79 | P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor |
JMSF044B11 | Sequence | 663 | 005035 (8) | ref|XP_004145937.1| | 5e-138 | PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu | 586 | 005831 (7) | ref|XP_007039158.1| | 2e-62 | P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor |
JMSF049F09 | Sequence | 689 | 005035 (8) | ref|XP_004145937.1| | 3e-146 | PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu | 736 | 005831 (7) | ref|XP_007039158.1| | 4e-77 | P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor |
JMSF051G24 | Sequence | 666 | 005035 (8) | ref|XP_004145937.1| | 7e-139 | PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu | 746 | 005831 (7) | ref|XP_007039158.1| | 6e-97 | P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor |
This contig is upended
. : . : . : . : . : . :
rJMSF051G24+ TGATCAGNATGCACGAGTGATGGTACTAGCT
____________________________________________________________
consensus TGATCAGNATGCACGAGTGATGGTACTAGCT
. : . : . : . : . : . :
rJMSF016M02+ TCTCCCCCAGGCCTTT
rJMSF051G24+ GCAACTAACCGTCCATCAGAGCTTGATGAAGCAATTCTTCGGCGTCTCCCCCAGGCCTTT
rJMFF031K13+ TT
rJMSF049F09+ TCTCCCCCAGGCCTTT
____________________________________________________________
consensus GCAACTAACCGTCCATCAGAGCTTGATGAAGCAATTCTTCGGCGTCTCCCCCAGGCCTTT
. : . : . : . : . : . :
rJMSF016M02+ GAGATTGGGATCCCCGAGCGCCGGGAGAGAGTAGAGATACTTAAGGTGATCCTCAGGGGT
rJMSF051G24+ GAGATTGGGATCCCCGAGCGCCGGGAGAGAGTAGAGATACTTAAGGTGATCCTCAGGGGT
rJMSF044B11+ GGGGT
rJMFF031K13+ GAGATTGGGATCCCCGAGCGCCGGGAGAGAGTAGAGATACTTAAGGTGATCCTCAGGGGT
rJMSF049F09+ GAGATTGGGATCCTCGAGCGCCGGGAGAGAGTAGAGATACTTAAGGTGATCCTCAGGGGT
____________________________________________________________
consensus GAGATTGGGATCCCCGAGCGCCGGGAGAGAGTAGAGATACTTAAGGTGATCCTCAGGGGT
. : . : . : . : . : . :
rJMSF016M02+ GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
rJMSF051G24+ GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
rJMSF044B11+ GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
rJMFF031K13+ GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
rJMSF049F09+ GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
____________________________________________________________
consensus GAGAAGGTTGAGGAAAGCATCGACTACGACTATATAGCTGGTTTATGCGATGGATACACT
. : . : . : . : . : . :
rJMSF016M02+ GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
rJMSF051G24+ GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
rJMSF044B11+ GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
rJMFF031K13+ GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
rJMSF049F09+ GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
____________________________________________________________
consensus GGTTCAGATCTTCTTGATCTCTGCAAGAAAGCTGCATATTTTCCCATCAGGGATCTTCTC
. : . : . : . : . : . :
rJMSF016M02+ GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
rJMSF051G24+ GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
rJMSF044B11+ GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
rJMFF031K13+ GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
rJMSF049F09+ GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
____________________________________________________________
consensus GATGATGAGAGAAGTGGACGCCCATGTTCAGAGCCGAGGCCATTATCACAAAGCGATTTG
. : . : . : . : . : . :
rJMSF016M02+ GAGAGAGTTGTATCAACTTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
rJMSF051G24+ GAGAGAGTTGTATCAACGTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
rJMSF044B11+ GAGAGAGTTGTATCAACGTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
rJMFF031K13+ GAGAGAGTTGTATCAACGTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
rJMSF049F09+ GAGAGAGTTGTATCAACGTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
____________________________________________________________
consensus GAGAGAGTTGTATCAACGTCAAAAAACACAAAAGTAGCTGCAAACGAATACAGCAGATTG
. : . : . : . : . : . :
rJMSF016M02+ AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
rJMSF051G24+ AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
rJMSF044B11+ AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
rJMFF031K13+ AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
rJMSF005J07+ CTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
rJMSF049F09+ AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
____________________________________________________________
consensus AGTTCACAAACATCTGGATGGTCACGGCAGAGGGACCAAGACGATTATCAGGTTCAAGCT
. : . : . : . : . : . :
rJMSF016M02+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMSF051G24+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMSF044B11+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMFF031K13+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMSF005J07+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMFF047E24+ CAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
rJMSF049F09+ GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
____________________________________________________________
consensus GCACTCAGCGAGCTCTCAAAGCTCGTCGTGTCACAGATTATCAACCTGCAGTCTGATTCT
. : . : . : . : . : . :
rJMSF016M02+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMSF051G24+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMSF044B11+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMFF031K13+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMSF005J07+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMFF047E24+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
rJMSF049F09+ AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
____________________________________________________________
consensus AACGACTCTTAAACCCCGCCACATTGCATTCACCATACAACAGACGCGTTATTAATGTTG
. : . : . : . : . : . :
rJMSF016M02+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMSF051G24+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMSF044B11+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMFF031K13+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMSF005J07+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMFF047E24+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
rJMSF049F09+ TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
____________________________________________________________
consensus TGAAATTTTGTATTGCTATTAGCTAAAGGGGGTGTCCTGGGATTTTAGTTTAAACAGCAA
. : . : . : . : . : . :
rJMSF016M02+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMSF051G24+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMSF044B11+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMFF031K13+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMSF005J07+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMFF047E24+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
rJMSF049F09+ ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
____________________________________________________________
consensus ACTTCTTTAGTCACCCACGTTCAAAGTTGCTTGATCCGTGATCATTATTCTTGCCTTCTT
. : . : . : . : . : . :
rJMSF016M02+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTT
rJMSF051G24+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTC
rJMSF044B11+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATA
rJMFF031K13+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTCTA
rJMSF005J07+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTCTATGA
rJMFF047E24+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTCTATGA
rJMSF049F09+ AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTCTATGA
____________________________________________________________
consensus AGTTGACCTTGCTAAGGTTGTGTAGTTTTTTGAAAAATATATTATGACTGAACTCTATGA
. : . : . : . : . : . :
rJMSF005J07+ AGTATGAGGATTTGACTTT
rJMFF047E24+ AGTATGAGGATTTGACTTT
rJMSF049F09+ AGTATGAGGATTTGACTTTTGGAAGAGATTCTCTTTACAAATCCATCATTAGAAATTAAA
____________________________________________________________
consensus AGTATGAGGATTTGACTTTTGGAAGAGATTCTCTTTACAAATCCATCATTAGAAATTAAA