Contig 005828:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF037P15Sequence658005295 (2)ref|XP_006362574.1|7e-44PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum772005828 (2)ref|XP_011070823.1|3e-23PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi
JMSF048N03Sequence660005295 (2)ref|XP_006362574.1|1e-17PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum720005828 (2)ref|XP_011070823.1|5e-26PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi

Alignment

This contig is upended


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rJMSF037P15+            AAAGATGACTTATCAAACACGACATCGACTGGAAAGACTTGAATATCTTGAGTTCATT
                      ____________________________________________________________
consensus               AAAGATGACTTATCAAACACGACATCGACTGGAAAGACTTGAATATCTTGAGTTCATT
 
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rJMSF037P15+          GGAGGAGCTTGAAGTGCTGAAGCTGGAGGAGAATGCGTTTAGGGGTGACTTTTGCAATTC
rJMSF048N03+          GGAGGAGCTTGAAGTGCTGAAGCTGGAGGAGAATGCGTTTACGGGTGACTTTTGCAATTC
                      ____________________________________________________________
consensus             GGAGGAGCTTGAAGTGCTGAAGCTGGAGGAGAATGCGTTTAGGGGTGACTTTTGCAATTC
 
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rJMSF037P15+          GAGCAACATTGTCTTCAAACAGCTGCGATATTTGAGGATTGGAAGGACTAATTTAGTGTC
rJMSF048N03+          GAGCAACATTGTCTTCAAACAGCTGCGATATTTGAGGATTGGAAGGACTAATTTAGTGTC
                      ____________________________________________________________
consensus             GAGCAACATTGTCTTCAAACAGCTGCGATATTTGAGGATTGGAAGGACTAATTTAGTGTC
 
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rJMSF037P15+          ATGGAAGGTCTCCAAGGATAGCTTTCAGGCACTGAAATATCTCATTCTCAGGCACTGCAA
rJMSF048N03+          ATGGAAGGTCTCCAAGGATAGCTTTCAGGCACTGAAATATCTCATTCTCAGGCACTGCAA
                      ____________________________________________________________
consensus             ATGGAAGGTCTCCAAGGATAGCTTTCAGGCACTGAAATATCTCATTCTCAGGCACTGCAA
 
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rJMSF037P15+          TGCCCTCGAAACTGTTCCTTCTGTGTTTGGTGAGGTTGAGAGCCTTAAGGTGATGGAATT
rJMSF048N03+          TGCCCTCGAAACTGTTCCTTCTGTGTTTGGTGAGGTTGAGAGCCTTAAGGTGATGGAATT
                      ____________________________________________________________
consensus             TGCCCTCGAAACTGTTCCTTCTGTGTTTGGTGAGGTTGAGAGCCTTAAGGTGATGGAATT
 
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rJMSF037P15+          GTTCTGTACCAATGGAAGGGCAGCTAATTCTGCTCGAGAAATACAGAAGCTGAAGAATGA
rJMSF048N03+          GTTCTGTACCAATGGAAGGGCAGCTAATTCTGCTCGAGAAATACAGAAGCTGAAGAATGA
                      ____________________________________________________________
consensus             GTTCTGTACCAATGGAAGGGCAGCTAATTCTGCTCGAGAAATACAGAAGCTGAAGAATGA
 
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rJMSF037P15+          AAACCAATGTGGATTTCAGCTCTCAATCTATCCTCCTGATCATTAAGTTCACCACAGAGA
rJMSF048N03+          AAACCAATGTGGATTTCAGCTCTCAATCTATCCTCCTGATCATTAAGTTCACCACAGAGA
                      ____________________________________________________________
consensus             AAACCAATGTGGATTTCAGCTCTCAATCTATCCTCCTGATCATTAAGTTCACCACAGAGA
 
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rJMSF037P15+          CGTTGTTTTTGGGTGTGAATTTCTTGCTGAAATGAAGGGCTATTGCAATTGTGTTGTCTC
rJMSF048N03+          CGTTGTTTTTGGGTGTGAATTTCTTGCTGAAATGAAGGGCTATTGCAATTGTGTTGTCTC
                      ____________________________________________________________
consensus             CGTTGTTTTTGGGTGTGAATTTCTTGCTGAAATGAAGGGCTATTGCAATTGTGTTGTCTC
 
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rJMSF037P15+          CCCATTTCGCCATTCCAGAGTGTGTTGTGACATTTTCTTTCTTTTCGAGCTATCTCAAGA
rJMSF048N03+          CCCATTTCGCCATTCCAGAGTGTGTTGTGACATTTTCTTTCTTTTCGAGCTATCTCAAGA
                      ____________________________________________________________
consensus             CCCATTTCGCCATTCCAGAGTGTGTTGTGACATTTTCTTTCTTTTCGAGCTATCTCAAGA
 
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rJMSF037P15+          CTACGTATTGTTGTTTGTTCCTTTGATTTCCACTTGCATTTTGTTGCTATTCTTATTTAA
rJMSF048N03+          CTACGTATTGTTGTTTGTTCCTTTGATTTCCACTTGCATTTTGTTGCTATTCTTATTTAA
                      ____________________________________________________________
consensus             CTACGTATTGTTGTTTGTTCCTTTGATTTCCACTTGCATTTTGTTGCTATTCTTATTTAA
 
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rJMSF037P15+          ACAATTGTTTTTCACTCATTCATCTAAATGTAAATCATTTTATGCTTCTCAACTTGGGAC
rJMSF048N03+          ACAATTGTTTTTCACTCATTCATCTAAATGTAAATCATTTTATGCTTCTCAACTTGGGAC
                      ____________________________________________________________
consensus             ACAATTGTTTTTCACTCATTCATCTAAATGTAAATCATTTTATGCTTCTCAACTTGGGAC
 
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rJMSF037P15+          TAGTGCATAGGGGTTCTTAGTAGAGTTTACTTCTTTTGTGTAGTATGCAAGCTATTACTC
rJMSF048N03+          TAGTGCATAGGGGTTCTTAGTAGAGTTTACTTCTTTTGTGTAGTATGCAAGCTATTACTC
                      ____________________________________________________________
consensus             TAGTGCATAGGGGTTCTTAGTAGAGTTTACTTCTTTTGTGTAGTATGCAAGCTATTACTC
 
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rJMSF037P15+          AGAAGCAATGTTTATCCTTTGCACACTAGCAGATAGTAGATGTGAACTTATCTG      
rJMSF048N03+          AGAAGCAATGTTTATCCTTTGCACACTAGCAGATAGTAGATGTGAACTTATCTGTCATCA
                      ____________________________________________________________
consensus             AGAAGCAATGTTTATCCTTTGCACACTAGCAGATAGTAGATGTGAACTTATCTGTCATCA