| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002B07 | Sequence | 624 | 009570 (6) | ref|XP_009609022.1| | 154 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| | 734 | 005825 (5) | ref|XP_009609022.1| | 189 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| |
| JMSF028P10 | Sequence | 667 | 009570 (6) | ref|XP_009609022.1| | 168 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| | 715 | 005825 (5) | ref|XP_009609022.1| | 193 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| |
| JMSF043L19 | Sequence | 815 | 009570 (6) | ref|XP_009763194.1| | 205 | PREDICTED: uncharacterized protein LOC104215143 [Nicotiana sylvestris] ref|XP_00 | 695 | 005825 (5) | ref|XP_009609022.1| | 179 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| |
| JMSF047N08 | Sequence | 673 | 009570 (6) | ref|XP_009609022.1| | 170 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| | 739 | 005825 (5) | ref|XP_009609022.1| | 177 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| |
| JMSF049I05 | Sequence | 681 | 009570 (6) | ref|XP_009609022.1| | 167 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| | 711 | 005825 (5) | ref|XP_009609022.1| | 177 | PREDICTED: uncharacterized protein LOC104102883 [Nicotiana tomentosiformis] ref| |
This contig is upended
. : . : . : . : . : . :
rJMSF028P10+ GCATCAAACTTGACTTCTGAGGATTTG
____________________________________________________________
consensus GCATCAAACTTGACTTCTGAGGATTTG
. : . : . : . : . : . :
rJMSF028P10+ ACAATGACAGTGCGTGCTCCAGGCTCCTTTACTTCTCCGCCTTCTGTGCTGTCATTGAGT
____________________________________________________________
consensus ACAATGACAGTGCGTGCTCCAGGCTCCTTTACTTCTCCGCCTTCTGTGCTGTCATTGAGT
. : . : . : . : . : . :
rJMSF028P10+ TCTTCACCAACATCACCACTGAGCCCCTTTCTTGGTTCTTCTGAGTTCACTGAAAGAGTG
rJMSF049I05+ CTGAGTTCACTGAAAGAGTG
rJMSF043L19+ CTGAGTTCACTGAAAGAGTG
rJMFF002B07+ CCCTTTCTTGGTTCTTCTGAGTTCACTGAAAGAGTG
rJMSF047N08+ TGAGTTCACTGAAAGAGTG
____________________________________________________________
consensus TCTTCACCAACATCACCACTGAGCCCCTTTCTTGGTTCTTCTGAGTTCACTGAAAGAGTG
. : . : . : . : . : . :
rJMSF028P10+ AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
rJMSF049I05+ AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
rJMSF043L19+ AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
rJMFF002B07+ AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
rJMSF047N08+ AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
____________________________________________________________
consensus AATAATGACAAACAAGCTGCTGCTGTGCAGAGGCTCAGCTCAACATCAGAGAGTAAAGTA
. : . : . : . : . : . :
rJMSF028P10+ CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
rJMSF049I05+ CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
rJMSF043L19+ CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
rJMFF002B07+ CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
rJMSF047N08+ CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
____________________________________________________________
consensus CACGAACTGAAAGGCCATTCAAGATCAGTTTCATTTAATGAGAAGGCCATTTCCCTACCC
. : . : . : . : . : . :
rJMSF028P10+ AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
rJMSF049I05+ AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
rJMSF043L19+ AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
rJMFF002B07+ AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
rJMSF047N08+ AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
____________________________________________________________
consensus AATGTCCTTCCAACTAATGATTTGGGCTGCACGCACTTATGGTTGCAGAGTAAGGTTCCC
. : . : . : . : . : . :
rJMSF028P10+ TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
rJMSF049I05+ TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
rJMSF043L19+ TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
rJMFF002B07+ TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
rJMSF047N08+ TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
____________________________________________________________
consensus TTGGGATGCGTTCCTTCTCAATCCACAGCAACAATCAAACTTGAGGTGCTTCCCTTGACA
. : . : . : . : . : . :
rJMSF028P10+ GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
rJMSF049I05+ GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
rJMSF043L19+ GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
rJMFF002B07+ GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
rJMSF047N08+ GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
____________________________________________________________
consensus GATGGCATAATCACACTTAATTCCTTGCAGATTGATGTAAAGGAGAAAGGTCTTACCTAT
. : . : . : . : . : . :
rJMSF028P10+ ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
rJMSF049I05+ ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
rJMSF043L19+ ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
rJMFF002B07+ ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
rJMSF047N08+ ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
____________________________________________________________
consensus ATACCTGAACAGTCTCTGAAAATATATGCAACTTCAAGTGTTTCCACTGCAATGAGGTGA
. : . : . : . : . : . :
rJMSF028P10+ TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
rJMSF049I05+ TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
rJMSF043L19+ TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
rJMFF002B07+ TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
rJMSF047N08+ TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
____________________________________________________________
consensus TTTTTCAACTTCGAATGTTAGGTTCGTATTGGCTTTGATGGTATATGGTTCACAGGGTAA
. : . : . : . : . : . :
rJMSF028P10+ TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
rJMSF049I05+ TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
rJMSF043L19+ TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
rJMFF002B07+ TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
rJMSF047N08+ TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
____________________________________________________________
consensus TACAATTCGACCAATCTCACCTTCCTCTTCCCTATATTTTGTCCAACTATGATTTGGTCT
. : . : . : . : . : . :
rJMSF028P10+ AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
rJMSF049I05+ AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
rJMSF043L19+ AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
rJMFF002B07+ AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
rJMSF047N08+ AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
____________________________________________________________
consensus AAATTTAATGTATATCCCTGTTTCATATGTCATTATCTGAGACCAGTAAATCGTGAACGG
. : . : . : . : . : . :
rJMSF028P10+ ATAAAGTTCGTTACCTCATCATAGAT
rJMSF049I05+ ATAAAGTTCGTTACCTCATCATAGATTGCAACTATTTCATTCACCTAATGTATGATTCAC
rJMSF043L19+ ATAAAGTTCGTTACCTCATCATAGATTGCAACTATTTCATTCACCTAATGTATGATTCAC
rJMFF002B07+ ATAAAGTTCGTTACCTCATCATAGATTGCAACTATTTCATTCACCTAATGTATGATTCAC
rJMSF047N08+ ATAAAGTTCGTTACCTCATCATAGATTGCAACTATTTCATTCACCTAATGTATGATTCAC
____________________________________________________________
consensus ATAAAGTTCGTTACCTCATCATAGATTGCAACTATTTCATTCACCTAATGTATGATTCAC
. : . : . : . : . : . :
rJMSF049I05+ GATGAGGTCATACATGCACCCCATTTGAGTCAGTATGATAGTGTCTCCTGTGGTATAAAC
rJMSF043L19+ GATGAGGTCATACATGCACCCCATTTGAGTCAGTATGATAGTGTCTCCTGTGGTATAAAC
rJMFF002B07+ GATGAGGTCATACATGCACCCCATTTGAGTCAGTATGATAGTGTCTCCTGTGGTATAAAC
rJMSF047N08+ GATGAGGTCATACATGCACCCCATTTGAGTCAGTATGATAGTGTCTCCTGTGGTATAAAC
____________________________________________________________
consensus GATGAGGTCATACATGCACCCCATTTGAGTCAGTATGATAGTGTCTCCTGTGGTATAAAC
. : . : . : . : . : . :
rJMSF049I05+ CTTCCTCCGTCTAAATACTCTT
rJMSF043L19+ CTTCC
rJMFF002B07+ CTTCCTCCGTCTAAATACTCTT
rJMSF047N08+ CTTCCTCCGTCTAAATACTCTTTGTAACGAATATTTGTGTCATTCATGTTAAAAAATGCG
____________________________________________________________
consensus CTTCCTCCGTCTAAATACTCTTTGTAACGAATATTTGTGTCATTCATGTTAAAAAATGCG