| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF012L14 | Sequence | 198 | 009404 (8) | 721 | 005822 (7) | gb|AAR87848.1| | 1e-81 | coronatine-insensitive 1 [Nicotiana tabacum] | |||
| JMSF028A16 | Sequence | 679 | 009404 (8) | ref|NP_001234464.1| | 2e-83 | coronatine-insensitive 1 [Solanum lycopersicum] gb|AAR82925.1| coronatine-insens | 779 | 005822 (7) | gb|AAR87848.1| | 5e-88 | coronatine-insensitive 1 [Nicotiana tabacum] |
| JMSF029O15 | Sequence | 692 | 009404 (8) | ref|XP_006355656.1| | 4e-67 | PREDICTED: coronatine-insensitive protein 1-like [Solanum tuberosum] | 725 | 005822 (7) | gb|AAR87848.1| | 2e-80 | coronatine-insensitive 1 [Nicotiana tabacum] |
| JMSF030F10 | Sequence | 659 | 009404 (8) | ref|XP_006355656.1| | 3e-24 | PREDICTED: coronatine-insensitive protein 1-like [Solanum tuberosum] | 715 | 005822 (7) | gb|AAR87848.1| | 1e-81 | coronatine-insensitive 1 [Nicotiana tabacum] |
| JMSF034I07 | Sequence | 690 | 009404 (8) | ref|XP_006355656.1| | 3e-41 | PREDICTED: coronatine-insensitive protein 1-like [Solanum tuberosum] | 797 | 005822 (7) | gb|AAR87848.1| | 1e-103 | coronatine-insensitive 1 [Nicotiana tabacum] |
| JMSF037L02 | Sequence | 570 | 002591 (5) | ref|XP_004234025.1| | 3e-120 | PREDICTED: 3-ketoacyl-CoA synthase 11-like [Solanum lycopersicum] | 633 | 005822 (7) | gb|AAR87848.1| | 3e-72 | coronatine-insensitive 1 [Nicotiana tabacum] |
| JMSF047E22 | Sequence | 696 | 009404 (8) | ref|XP_006355656.1| | 9e-74 | PREDICTED: coronatine-insensitive protein 1-like [Solanum tuberosum] | 751 | 005822 (7) | gb|AAR87848.1| | 5e-86 | coronatine-insensitive 1 [Nicotiana tabacum] |
This contig is upended
. : . : . : . : . : . :
rJMSF034I07+ ATNGAAGATGTAGAAGGAGTAGTTACTCAAAGAGGATTATTGCTTA
____________________________________________________________
consensus ATNGAAGATGTAGAAGGAGTAGTTACTCAAAGAGGATTATTGCTTA
. : . : . : . : . : . :
rJMSF034I07+ GCCCAAGGATGCTTTGAGCTGGAATACTNGGCTGTATATGTAACTGACATCACAAATGAA
rJMSF028A16+ TAACTGACATCACAAATGAA
____________________________________________________________
consensus GCCCAAGGATGCTTTGAGCTGGAATACTNGGCTGTATATGTAACTGACATCACAAATGAA
. : . : . : . : . : . :
rJMSF034I07+ GCTCTAGCGTACATTGGGAAATACTTGAAAAACCTCTGTGATTTTCGTCTCGTTTTGCTT
rJMSF030F10+ TCGTCTCGTTTTGCTT
rJMSF012L14+ TTCGTCTCGTTTTGCTT
rJMSF029O15+ CGTCTCGTTTTGCTT
rJMSF028A16+ GCTCTAGCGTACA-TNGGAAATACTTGAAAAACCTCTGTGATTTTCGTCTCGTTTTGCTT
rJMSF047E22+ AAACCTCTGTGATTTTCGTCTCGTTTTGCTT
____________________________________________________________
consensus GCTCTAGCGTACATTGGGAAATACTTGAAAAACCTCTGTGATTTTCGTCTCGTTTTGCTT
. : . : . : . : . : . :
rJMSF034I07+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
rJMSF030F10+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
rJMSF037L02+ CAACGGAGTCCGATCTCTATTAAAA
rJMSF012L14+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
rJMSF029O15+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
rJMSF028A16+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
rJMSF047E22+ GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
____________________________________________________________
consensus GCTCAAGAGGAGATAATAACAGACCTTCCACTTGACAACGGAGTCCGATCTCTATTAAAA
. : . : . : . : . : . :
rJMSF034I07+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF030F10+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF037L02+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF012L14+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF029O15+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF028A16+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
rJMSF047E22+ GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
____________________________________________________________
consensus GGTTGCCATAATCTTATAAGGTTTGCTCTCTATCTTCGACCTGGGGGATTAACAGACGTG
. : . : . : . : . : . :
rJMSF034I07+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF030F10+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF037L02+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF012L14+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF029O15+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF028A16+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
rJMSF047E22+ GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
____________________________________________________________
consensus GGACTTGGTTATATTGGGCAGTTCAGCGCCAACATAAGATGGATGCTTCTAGGATGTGTT
. : . : . : . : . : . :
rJMSF034I07+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF030F10+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF037L02+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF012L14+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF029O15+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF028A16+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
rJMSF047E22+ GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
____________________________________________________________
consensus GGAGAATCGGATGACGGACTTCTGCAGTTCTCGAAGGGGTGCCCGAGCCTACAAAAGCTC
. : . : . : . : . : . :
rJMSF034I07+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF030F10+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF037L02+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF012L14+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF029O15+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF028A16+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
rJMSF047E22+ GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
____________________________________________________________
consensus GAAATGAGGGACTGTTCCTTCAGCGAACGTTCACTAGCTATAGCAGCCAAACAGCTGAAA
. : . : . : . : . : . :
rJMSF034I07+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF030F10+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF037L02+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF012L14+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF029O15+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF028A16+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
rJMSF047E22+ TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
____________________________________________________________
consensus TCTCTGAGATACTTGTGGGCGCAAGGGTATCGGCCATCTCCAAATGGTTGGGATCTCTTA
. : . : . : . : . : . :
rJMSF034I07+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF030F10+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF037L02+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF012L14+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF029O15+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF028A16+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
rJMSF047E22+ TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
____________________________________________________________
consensus TACATGGCTCGGCAATTCTGGAATCTCGAGCTTATTCTTGACACTGATCAAAGTGGTACA
. : . : . : . : . : . :
rJMSF034I07+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF030F10+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF037L02+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF012L14+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF029O15+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF028A16+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
rJMSF047E22+ ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
____________________________________________________________
consensus ACCGCAATCTCTGAGCACCCAGCCCATCTCCTCGCATACTATTCACTAGCTGGGCGAAGA
. : . : . : . : . : . :
rJMSF034I07+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF030F10+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF037L02+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF012L14+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF029O15+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGGCCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF028A16+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
rJMSF047E22+ ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
____________________________________________________________
consensus ACAGATTCTCCTGAAACTGTCATCTGCTTCGACCCAAATGCCCTTGCATTTTAGGACTTT
. : . : . : . : . : . :
rJMSF034I07+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF030F10+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF037L02+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF012L14+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF029O15+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF028A16+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
rJMSF047E22+ TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
____________________________________________________________
consensus TACCCACTTTTTCCTTGATCTAATCTATCCATTAGTCACTTGTGTTTTACCTTCTACTAA
. : . : . : . : . : . :
rJMSF034I07+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTT
rJMSF030F10+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
rJMSF037L02+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
rJMSF012L14+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
rJMSF029O15+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
rJMSF028A16+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
rJMSF047E22+ ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
____________________________________________________________
consensus ATAGTCTTTTCCCCATTGATTTCTAGTTTTTGGTAATCTTGCAGCAATGCAATAAACATT
. : . : . : . : . : . :
rJMSF030F10+ GATTGTGTTGTAAACCATAAGAATAGTGTACTTGGTGCT
rJMSF037L02+ GATTGTGT
rJMSF012L14+ GATTGTGTTGTAAACCATAAGAATAGTGTAC
rJMSF029O15+ GATTGTGTTGTAAACCATAAGAATAGTGTAC
rJMSF028A16+ GATTGTGTTGTAAACCATAAGAATAGTGTACTTGGTGCT
rJMSF047E22+ GATTGTGTTGTAAACCATAAGAATAGTGTACTTGGTGCTTAGTTGTTACCTCCAAAATGA
____________________________________________________________
consensus GATTGTGTTGTAAACCATAAGAATAGTGTACTTGGTGCTTAGTTGTTACCTCCAAAATGA