Contig 005806:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003P10Sequence273013218 (5)gb|AAG24863.1|2e-38CONSTANS-like protein [Ipomoea nil]729005806 (5)gb|AAG24863.1|3e-67CONSTANS-like protein [Ipomoea nil]
JMSF006B10Sequence237003713 (11)gb|KCW57201.1|1e-23hypothetical protein EUGRSUZ_H00016 [Eucalyptus grandis]314005806 (5)gb|AAG24863.1|2e-40CONSTANS-like protein [Ipomoea nil]
JMSF018C16Sequence429013218 (5)gb|AAG24863.1|7e-69CONSTANS-like protein [Ipomoea nil]773005806 (5)gb|AAG24863.1|4e-67CONSTANS-like protein [Ipomoea nil]
JMSF044M14Sequence771013218 (5)gb|AAG24863.1|1e-106CONSTANS-like protein [Ipomoea nil]777005806 (5)gb|AAG24863.1|5e-67CONSTANS-like protein [Ipomoea nil]
JMSF046I10Sequence733005806 (5)gb|AAG24863.1|2e-66CONSTANS-like protein [Ipomoea nil]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF018C16+ AATTTCAACTGCAAGGAATG
                      ____________________________________________________________
consensus AATTTCAACTGCAAGGAATG
 
. : . : . : . : . : . :
rJMSF003P10+ TCCAGCATCCATCAGTCACACAGTAAGT
rJMSF046I10+ TCCAGCATCCATCAGTCACACAGTAAGT
rJMSF018C16+ GAATATGAGAATTTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
rJMSF044M14+ TTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
                      ____________________________________________________________
consensus GAATATGAGAATTTTAACACGGGATATGGTTATCCAGCATCCATCAGTCACACAGTAAGT
 
. : . : . : . : . : . :
rJMSF003P10+ TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA--TTTTTTTATTTT
rJMSF046I10+ TTTCTTCATCATATNCAATTGTCTCACTTCAGGTAAGACAATTTTATTTTTTTTATTTTT
rJMSF018C16+ TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
rJMSF044M14+ TTTNTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
                      ____________________________________________________________
consensus TTTCTTCATCATATCCAATTGTCTCACTTCAGGTAAGACAATTTTA-TTTTTTTATTTTT
 
. : . : . : . : . : . :
rJMSF003P10+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF046I10+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF018C16+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
rJMSF044M14+ TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
                      ____________________________________________________________
consensus TCATGAGGAATTTAAGATATCAATATTCCAATAAAACCCAACGTCAAGATATTTCTAGGA
 
. : . : . : . : . : . :
rJMSF003P10+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
rJMSF046I10+ GATCATNTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
rJMSF018C16+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGAAATCAAGGTATGCAAC
rJMSF044M14+ GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGG-AATCAAGGTATGCAAC
                      ____________________________________________________________
consensus GATCATTTTAGTCATTCACTTGCTAGTCCTGTTTCTCCTTCGGGAATCAAGGTATGCAAC
 
. : . : . : . : . : . :
rJMSF003P10+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF046I10+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF018C16+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
rJMSF044M14+ TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
                      ____________________________________________________________
consensus TTCCCCTAAAGACTAATTATGATGCTCAAATCTCAAGGAAACGAAGCACCTAACTGGTAT
 
. : . : . : . : . : . :
rJMSF003P10+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF046I10+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF018C16+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
rJMSF044M14+ ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
                      ____________________________________________________________
consensus ATTGTGATTTTGGGTTACCAGGTCTCCATTTCTTCCATGGATGTTGGTGTTGTTCCAGAG
 
. : . : . : . : . : . :
rJMSF003P10+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF046I10+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF018C16+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
rJMSF044M14+ TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
                      ____________________________________________________________
consensus TCTACCTTGAGTGATACCTCAATCTCCCACTCAAGAGCCTCGAAAGGAACAATTGACCTC
 
. : . : . : . : . : . :
rJMSF003P10+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF006B10+ AGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF046I10+ TTCTCAGGTCCTCCAACTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF018C16+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
rJMSF044M14+ TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
                      ____________________________________________________________
consensus TTCTCAGGTCCTCCAATTCAGATGCCTCCACAGCTTCAGCTTAGTCAAATGGACAGGGAG
 
. : . : . : . : . : . :
rJMSF003P10+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF006B10+ GCCAGAGTTNTCAGGTACAGGGAGAAGAAGANGNCCCGCANGTTTGAGAAGCCCNTCCGG
rJMSF046I10+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF018C16+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
rJMSF044M14+ GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
                      ____________________________________________________________
consensus GCCAGAGTTCTCAGGTACAGGGAGAAGAAGAAGACCCGCAAGTTTGAGAAGACCATCCGG
 
. : . : . : . : . : . :
rJMSF003P10+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF006B10+ TACGCCTCAAGAAAGGCCTNTGCAGAAACCAGGCCAAGAATAAAAGGTCGNTTTGCAANG
rJMSF046I10+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF018C16+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
rJMSF044M14+ TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
                      ____________________________________________________________
consensus TACGCCTCAAGAAAGGCCTATGCAGAAACCAGGCCAAGAATAAAAGGTCGATTTGCAAAG
 
. : . : . : . : . : . :
rJMSF003P10+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF006B10+ AGAACAGATGTAGATNCCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF046I10+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF018C16+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
rJMSF044M14+ AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
                      ____________________________________________________________
consensus AGAACAGATGTAGATACCGAGGTTGATCAGATCTTCTATGCACCATTGATGGCAGAAAGT
 
. : . : . : . : . : . :
rJMSF003P10+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF006B10+ GGATACGGAATTCTTCCATCATTCTGAATCCAAAANCAGAGACAATCTTTAGAGCTACTT
rJMSF046I10+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF018C16+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
rJMSF044M14+ GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
                      ____________________________________________________________
consensus GGATACGGAATTGTTCCATCATTCTGAATCCAAAAACAGAGACAATCTTTAGAGCTACTT
 
. : . : . : . : . : . :
rJMSF003P10+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF006B10+ CAATTAGTGTANTCTTAGAGTTACTTCAATTAG
rJMSF046I10+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF018C16+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAG
rJMSF044M14+ CAATTAGTGTATTCTTAGAGTTACTTCAATTAGTGTATTCTTAAGCATAACCAGGTGTTC
                      ____________________________________________________________
consensus CAATTAGTGTATTCTTAGAGTTACTTCAATTAGTGTATTCTTAAGCATAACCAGGTGTTC