Contig 005782:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039E07Sequence701006642 (2)ref|XP_009595172.1|2e-106PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like 931005782 (2)ref|XP_002513896.1|1e-140Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus
JMSF040K19Sequence666006642 (2)gb|KDP41359.1|9e-98hypothetical protein JCGZ_15766 [Jatropha curcas]831005782 (2)ref|XP_002513896.1|4e-125Endoplasmic reticulum-Golgi intermediate compartment protein, putative [Ricinus

Alignment

This contig is upended


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rJMSF039E07+                                                              GGTGCAGA
                      ____________________________________________________________
consensus                                                                 GGTGCAGA
 
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rJMSF039E07+          AGCGTCAGATGACCATTGTTGCAACTCTTGNGAANGATGTTCGTGAAGCTTACAGAAAAA
                      ____________________________________________________________
consensus             AGCGTCAGATGACCATTGTTGCAACTCTTGNGAANGATGTTCGTGAAGCTTACAGAAAAA
 
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rJMSF039E07+          AGGGCTGGGNCAGTGTCAAATCCTGATTTAATTGACCAGTGCAAAAGAGAAGGCTTTCTT
                      ____________________________________________________________
consensus             AGGGCTGGGNCAGTGTCAAATCCTGATTTAATTGACCAGTGCAAAAGAGAAGGCTTTCTT
 
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rJMSF039E07+          CAAAGGATCAAAGAAGAAGACGGTGAAGGGTGCAATATATATGGATTTTTGGAAGTCAAC
rJMSF040K19+                   AAAGAAGAAGACGGTGAAGGGTGCAATATATATGGATTTTTGGAAGTCAAC
                      ____________________________________________________________
consensus             CAAAGGATCAAAGAAGAAGACGGTGAAGGGTGCAATATATATGGATTTTTGGAAGTCAAC
 
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rJMSF039E07+          AAAGTGGCTGGAAATTTCCATTTTGCACCTGGAAAGAGTTTTCAACAGTCAAATGTGCAT
rJMSF040K19+          AAAGTGGCTGGAAATTTCCATTTTGCACCTGGAAAGAGTTTTCAACAGTCAAATGTGCAT
                      ____________________________________________________________
consensus             AAAGTGGCTGGAAATTTCCATTTTGCACCTGGAAAGAGTTTTCAACAGTCAAATGTGCAT
 
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rJMSF039E07+          GTCCATGATCTCCTTGCATTCCAAAAGGATAGTTTCAATATAAGCCACAAGATCAATAGG
rJMSF040K19+          GTCCATGATCTCCTTGCATTCCAAAAGGATAGTTTCAATATAAGCCACAAGATCAATAGG
                      ____________________________________________________________
consensus             GTCCATGATCTCCTTGCATTCCAAAAGGATAGTTTCAATATAAGCCACAAGATCAATAGG
 
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rJMSF039E07+          TTAGCTTATGGAGACTATTTTCCGGGTGTTGTGAATCCTCTTGATGGTGTGCAATGGACA
rJMSF040K19+          TTAGCTTATGGAGACTATTTTCCGGGTGTTGTGAATCCTCTTGATGGTGTGCAATGGACA
                      ____________________________________________________________
consensus             TTAGCTTATGGAGACTATTTTCCGGGTGTTGTGAATCCTCTTGATGGTGTGCAATGGACA
 
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rJMSF039E07+          CAAAAAACTCCCAATGGGATGTATCAATACTTTCTCAAGGTAGTACCTACTGTATACACT
rJMSF040K19+          CAAAAAACTCCCAATGGGATGTATCAATACTTTCTCAAGGTAGTACCTACTGTATACACT
                      ____________________________________________________________
consensus             CAAAAAACTCCCAATGGGATGTATCAATACTTTCTCAAGGTAGTACCTACTGTATACACT
 
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rJMSF039E07+          GATGTTAATGGGTACACCATACAGTCAAATCAGTTCTCTGTAACTGAACATTTTAAGGGA
rJMSF040K19+          GATGTTAATGGGTACACCATACAGTCAAATCAGTTCTCTGTAACTGAACATTTTAAGGGA
                      ____________________________________________________________
consensus             GATGTTAATGGGTACACCATACAGTCAAATCAGTTCTCTGTAACTGAACATTTTAAGGGA
 
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rJMSF039E07+          TCAGAAGCAGGTCAACTTCAGACTCTTCCTGGAGTTTTCTTCTTTTATGATCTTTCACCA
rJMSF040K19+          TCAGAAGCAGGTCAACTTCAGACTCTTCCTGGAGTTTTCTTCTTTTATGATCTTTCACCA
                      ____________________________________________________________
consensus             TCAGAAGCAGGTCAACTTCAGACTCTTCCTGGAGTTTTCTTCTTTTATGATCTTTCACCA
 
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rJMSF039E07+          ATCAAGGTGACTTTCACTGAGCAACATGTTTCATTCTTGCATTTTCTGACAAGTGTCTGT
rJMSF040K19+          ATCAAGGTGACTTTCACTGAGCAACATGTTTCATTCTTGCATTTTCTGACAAGTGTCTGT
                      ____________________________________________________________
consensus             ATCAAGGTGACTTTCACTGAGCAACATGTTTCATTCTTGCATTTTCTGACAAGTGTCTGT
 
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rJMSF039E07+          GCAATAGTTGGAGGGGTGTTCACTGTGTCAGGAATACTTGATTCATTCATATATCACGGC
rJMSF040K19+          GCAATAGTTGGAGGGGTGTTCACTGTGTCAGGAATACTTGATTCATTCATATATCACGGC
                      ____________________________________________________________
consensus             GCAATAGTTGGAGGGGTGTTCACTGTGTCAGGAATACTTGATTCATTCATATATCACGGC
 
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rJMSF039E07+          CAAAAGGCGATTAAAAAGAAGATGGAACTTGGTAAATTCAGCTAGCTGATCGGTTGGTAT
rJMSF040K19+          CAAAAGGCGATTAAAAAGAAGATGGAACTTGGTAAATTCAGCTAGCTGATCGGTTGGTAT
                      ____________________________________________________________
consensus             CAAAAGGCGATTAAAAAGAAGATGGAACTTGGTAAATTCAGCTAGCTGATCGGTTGGTAT
 
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rJMSF039E07+          CCATGGTTTTGCCATACATGATCATCCATGTATCACTGCCAACTAACAGAATGAGCATGG
rJMSF040K19+          CCATGGTTTTGCCATACATGATCATCCATGTATCACTGCCAACTAACAGAATGAGCATGG
                      ____________________________________________________________
consensus             CCATGGTTTTGCCATACATGATCATCCATGTATCACTGCCAACTAACAGAATGAGCATGG
 
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rJMSF039E07+          CATGGAGTGTCTTTACATGTTTGCAGCCTGACTTTTAATTACAAGAGTTTTTGGGCATTG
rJMSF040K19+          CATGGAGTGTCTTTACATGTTTGCAGCCTGACTTTTAATTACAAGAGTTTTTGGGCATNG
                      ____________________________________________________________
consensus             CATGGAGTGTCTTTACATGTTTGCAGCCTGACTTTTAATTACAAGAGTTTTTGGGCATTG
 
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rJMSF039E07+          TACTGAGAGTAGAGAATTAGATCAATCTTTTTGTTCAATTTAATGAGATTTTTTCTTCTT
rJMSF040K19+          TACTGAGAGTAGAGAATTAGATCAATCTTTTTGTTCAATTTAATGAGATTTTTTCTTCTT
                      ____________________________________________________________
consensus             TACTGAGAGTAGAGAATTAGATCAATCTTTTTGTTCAATTTAATGAGATTTTTTCTTCTT
 
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rJMSF039E07+          ATCTGTATTTGTGATAGTAATTT                                     
rJMSF040K19+          ATCTGTATTTGTGATAGTAATTTATGCAACTAACAAAATTCAAGGTCAAATATTAGAAAC
                      ____________________________________________________________
consensus             ATCTGTATTTGTGATAGTAATTTATGCAACTAACAAAATTCAAGGTCAAATATTAGAAAC