Contig 005780:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034B21Sequence437010843 (3)ref|XP_009791815.1|3e-22PREDICTED: probable E3 ubiquitin-protein ligase ARI8 [Nicotiana sylvestris]713005780 (2)ref|XP_008218485.1|2e-50PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Prun
JMSF040D07Sequence664010843 (3)gb|EYU39736.1|1e-54hypothetical protein MIMGU_mgv1a003228mg [Erythranthe guttata]853005780 (2)ref|XP_008218485.1|6e-85PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase ARI8 [Prun

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040D07+ CACAGTTGAAGTT
                      ____________________________________________________________
consensus CACAGTTGAAGTT
 
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rJMSF040D07+ CATAATAGATGCTTGGCTGCAGATAGTTGAATGTAGACGGGTGCTAAAATGGACTTATGC
                      ____________________________________________________________
consensus CATAATAGATGCTTGGCTGCAGATAGTTGAATGTAGACGGGTGCTAAAATGGACTTATGC
 
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rJMSF040D07+ ATATGGATATTACTTACCTGAGCATGACCGTGCTAAGAGGCAATTCTTCGAGTATCTACA
                      ____________________________________________________________
consensus ATATGGATATTACTTACCTGAGCATGACCGTGCTAAGAGGCAATTCTTCGAGTATCTACA
 
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rJMFF034B21+ GCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
rJMSF040D07+ AGGTGAAGCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
                      ____________________________________________________________
consensus AGGTGAAGCTGAATCTGGGTTAGAGCGGCTTCATCAATGTGCCGAGAAGGAACTCCAAAG
 
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rJMFF034B21+ ATACNTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
rJMSF040D07+ ATACCTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
                      ____________________________________________________________
consensus ATACCTTAATGCAGATGGTCCATCAAAAGACTTCAATGAGTTCCGCACAAAGCTAGCAGG
 
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rJMFF034B21+ GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
rJMSF040D07+ GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
                      ____________________________________________________________
consensus GCTAACAAGTGTCACTCGAAATTACTTTGAAAACCTGGTCCGAGCTTTAGAGAACGGTCT
 
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rJMFF034B21+ GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
rJMSF040D07+ GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
                      ____________________________________________________________
consensus GTCAGACGTGGACCCTCGAGGTGCTTGCAGCAGGGCAACGAGTTCAAAAAACCTGGGATG
 
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rJMFF034B21+ CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
rJMSF040D07+ CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
                      ____________________________________________________________
consensus CTTAAGCAGCAAAGGGAGCAGAAGCAGAAGCAGGGGAACCACATCCAGATCATCAAGCAG
 
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rJMFF034B21+ TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
rJMSF040D07+ TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
                      ____________________________________________________________
consensus TTCCAAAAACATAGACGATTCTGGACACTGGTCTTGTCAATACTGCACATTTGCCAACGT
 
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rJMFF034B21+ TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
rJMSF040D07+ TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
                      ____________________________________________________________
consensus TAGATCTGCTAATATTTGTCAGATGTGTCAGCAACGCCCTTGAAGCGAATTCAACTTGCA
 
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rJMFF034B21+ GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
rJMSF040D07+ GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
                      ____________________________________________________________
consensus GTGAATTCTGATACCGCATCTACTGAAGACTGGGTCATCGGGGAAATGAGGTAAAAGGAG
 
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rJMFF034B21+ GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
rJMSF040D07+ GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
                      ____________________________________________________________
consensus GATATCGGATTACCACGTTCCCTTCAAAACCCTTTCCCATCCCAGCAGAGATGCTGTACA
 
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rJMFF034B21+ TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
rJMSF040D07+ TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
                      ____________________________________________________________
consensus TAGTTCAGGTTGTGTCTTGTGTGTGTTTCCTATATATAATATCCTGTAACAACATCCTTT
 
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rJMFF034B21+ CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
rJMSF040D07+ CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
                      ____________________________________________________________
consensus CATAGAACCTCATTTTCATGTTTTATTTTATTTATATTGCTATTTAGGACGCAGGAAAAA
 
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rJMFF034B21+ TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA
rJMSF040D07+ TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA
                      ____________________________________________________________
consensus TCTGCTGGCTTAAAGCTGTTGTATTGTACACTACTTCTATAGGGAGTCATAATATAACTA