Contig 005776:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF039F09+                                                                 TCGTC
                      ____________________________________________________________
consensus                                                                    TCGTC
 
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rJMSF039F09+          ATCAACAGAAAAGCCTCAGCTCTGGGCCATATTAGATGGGATACGGCTTATTTTGTCGTC
                      ____________________________________________________________
consensus             ATCAACAGAAAAGCCTCAGCTCTGGGCCATATTAGATGGGATACGGCTTATTTTGTCGTC
 
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rJMSF023D09+                                                                   CTT
rJMSF039F09+          AACATATTTGCAATATGTTGCGTTATTTTTGTGGCTAGGTGCAGTTATCTCCTCTTTCTT
                      ____________________________________________________________
consensus             AACATATTTGCAATATGTTGCGTTATTTTTGTGGCTAGGTGCAGTTATCTCCTCTTTCTT
 
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rJMSF023D09+          CTACTTTCAGAAAGTGACTGTTATTGCGAAAACAGTTACAAATCCTGTCGGGAGAAGGAG
rJMSF039F09+          CTACTTTCAGAAAGTGACTGTTATTGCGAAAACAGTTACAAATCCTGTCGGGAGAAGGAG
                      ____________________________________________________________
consensus             CTACTTTCAGAAAGTGACTGTTATTGCGAAAACAGTTACAAATCCTGTCGGGAGAAGGAG
 
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rJMSF023D09+          GTTATTAGCTGAGATCAATAGCTTCATTGCTGTTTTCATCCTTATAGGACAACTTACATT
rJMSF039F09+          GTTATTAGCTGAGGTCAATAGCTTCATTGCTGTTTTCATCCTTATAGGACAACTTACATT
                      ____________________________________________________________
consensus             GTTATTAGCTGAGGTCAATAGCTTCATTGCTGTTTTCATCCTTATAGGACAACTTACATT
 
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rJMSF023D09+          AACGGGGCGTATCCTTACTGTTGCTGGGATTACTTTAGCCATTTGCTCTTCTCCCTTTGT
rJMSF039F09+          AACGGGGCGTATCCTTACTGTTGCTGGGATTACTTTAGCCATTTGCTCTTCTCCCTTTGT
                      ____________________________________________________________
consensus             AACGGGGCGTATCCTTACTGTTGCTGGGATTACTTTAGCCATTTGCTCTTCTCCCTTTGT
 
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rJMSF023D09+          TGCGTGCATTAATTTAATTACATTAGCGATATGGCCTACATGGGTTCAAGTGGCCATATC
rJMSF039F09+          TGCGTGCATTAATTTAATTACATTGGCGATATGGCCTACATGGGTTCAAGTGGCCATATC
                      ____________________________________________________________
consensus             TGCGTGCATTAATTTAATTACATTGGCGATATGGCCTACATGGGTTCAAGTGGCCATATC
 
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rJMSF023D09+          TGAAACTCTTAGAAAGGTCGTCAGTTATGTAGTAACTAGGCCAGGAAGGGAACTCCTTTT
rJMSF039F09+          TGAAACTCTTAGAAAGGTCGTCAGTTATGTAGTAACTAGGCCAGGAAGGGAACTCCTTTT
                      ____________________________________________________________
consensus             TGAAACTCTTAGAAAGGTCGTCAGTTATGTAGTAACTAGGCCAGGAAGGGAACTCCTTTT
 
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rJMSF023D09+          CACCGTTGTCTCACAGGAAGAGAAGTATAAAGCAAAGGTATGCATAGATGTAATCGTTCA
rJMSF039F09+          CACCGTTGTCTCACAGGAAGAGAAGTATAAAGCAAAGGTATGCATAGATGTAATCGTTCA
                      ____________________________________________________________
consensus             CACCGTTGTCTCACAGGAAGAGAAGTATAAAGCAAAGGTATGCATAGATGTAATCGTTCA
 
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rJMSF023D09+          AAGGCTCGGGGACGCTACAGCAGCTGGCATGTACAAGCTACTATTCAGCACGCTAAATGG
rJMSF039F09+          AAGGCTCGGGGACGCTACAGCAGCTGGCATGTACAAGCTACTATTCAGCACGCTAAATGG
                      ____________________________________________________________
consensus             AAGGCTCGGGGACGCTACAGCAGCTGGCATGTACAAGCTACTATTCAGCACGCTAAATGG
 
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rJMSF023D09+          CAAAGTCTCAACAGTCTCTCTATATGCCCTGCCTGTCTGCTTCTTGTGGATAATGACTGG
rJMSF039F09+          CAAAGTCTCAACAGTCTCTCTATATGCCCTGCCTGTCTGCTTCTTGTGGATAATGACTGG
                      ____________________________________________________________
consensus             CAAAGTCTCAACAGTCTCTCTATATGCCCTGCCTGTCTGCTTCTTGTGGATAATGACTGG
 
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rJMSF023D09+          TTTCCATTTAGGGCGCCGGCAAAAACAACTCTCAAGGCTACAATCACTTGCAGCAGTAGT
rJMSF039F09+          TTTCCATTTAGGGCGCCGGCAAAAACAACTCTCAAGGCTACAATCACTTGCAGCAGTAGT
                      ____________________________________________________________
consensus             TTTCCATTTAGGGCGCCGGCAAAAACAACTCTCAAGGCTACAATCACTTGCAGCAGTAGT
 
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rJMSF023D09+          TGAAATGGCTGGGAGCTGATCCTTTTTCATCCTAGATCCTAGTGTAGAATTTGTAAGGAA
rJMSF039F09+          TGAAATGGCTGGGAGCTGATCCTTTTTCATCCTAGATCCTAGTGTAGAATTTGTAAGGAA
                      ____________________________________________________________
consensus             TGAAATGGCTGGGAGCTGATCCTTTTTCATCCTAGATCCTAGTGTAGAATTTGTAAGGAA
 
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rJMSF023D09+          ATTATGTGTCATTTTTACAGATTTACCCACACGTTGAACAAAACCAGAAACAGATTCACC
rJMSF039F09+          ATTATGTGTCATTTTTACAGATTTACCCACACGTTGAACAAAACCAGAAACAGATTCACC
                      ____________________________________________________________
consensus             ATTATGTGTCATTTTTACAGATTTACCCACACGTTGAACAAAACCAGAAACAGATTCACC
 
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rJMSF023D09+          ATAAAGGAAGTGAAGTGTAATAGTCTTTGCTTTCTTTGTAGTTGAC              
rJMSF039F09+          ATAAAGGAAGTGAAGTGTAATAGTCTTTGCTTTCTTTGTAGTTGACCAGATGTAGAAATC
                      ____________________________________________________________
consensus             ATAAAGGAAGTGAAGTGTAATAGTCTTTGCTTTCTTTGTAGTTGACCAGATGTAGAAATC