Contig 005774:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001E22Sequence344010537 (3)ref|XP_006353595.1|1e-43PREDICTED: tubulin-folding cofactor E-like [Solanum tuberosum]177005774 (3)ref|XP_009606625.1|3e-08PREDICTED: tubulin-folding cofactor E isoform X1 [Nicotiana tomentosiformis]
JMSF039B24Sequence693010537 (3)ref|XP_010313057.1|2e-112PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum]825005774 (3)ref|XP_009606626.1|3e-96PREDICTED: tubulin-folding cofactor E isoform X2 [Nicotiana tomentosiformis]
JMSF049M22Sequence369010537 (3)ref|XP_010313057.1|1e-56PREDICTED: tubulin-folding cofactor E isoform X2 [Solanum lycopersicum]178005774 (3)

Alignment

This contig is upended


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rJMSF039B24+                       TGGTAACAACATCATTAAAGATGTGGAATCTGTTGATTTCGCTGAAT
                      ____________________________________________________________
consensus                          TGGTAACAACATCATTAAAGATGTGGAATCTGTTGATTTCGCTGAAT
 
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rJMSF039B24+          TATTTTCCTAATTTGTTGGAAGTAAGACTTTCTGAGAATCCAGTGACAGATCCAGTAAAA
                      ____________________________________________________________
consensus             TATTTTCCTAATTTGTTGGAAGTAAGACTTTCTGAGAATCCAGTGACAGATCCAGTAAAA
 
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rJMSF039B24+          AGTGGCCTATCTCGATTTGTTTTGGTGGCACGCCTAGCAGGAGTAAAAATATTAAATGGA
                      ____________________________________________________________
consensus             AGTGGCCTATCTCGATTTGTTTTGGTGGCACGCCTAGCAGGAGTAAAAATATTAAATGGA
 
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rJMSF039B24+          AGTGAGATTAGTCCTAGAGAGCGGAAGGAATCTGAAATTCGGTATGTCCGATTAGTCATG
                      ____________________________________________________________
consensus             AGTGAGATTAGTCCTAGAGAGCGGAAGGAATCTGAAATTCGGTATGTCCGATTAGTCATG
 
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rJMSF039B24+          TCTAAATGTCATGAATATCCACAAGAAATCGACCGACTTCACCCGAGATTTGCTGAGCTA
                      ____________________________________________________________
consensus             TCTAAATGTCATGAATATCCACAAGAAATCGACCGACTTCACCCGAGATTTGCTGAGCTA
 
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rJMSF039B24+          AAAAGACACCATGGAATTGATGATGAAAAACCAGAGAGTGGAACAACCGGACCCCAGAAA
                      ____________________________________________________________
consensus             AAAAGACACCATGGAATTGATGATGAAAAACCAGAGAGTGGAACAACCGGACCCCAGAAA
 
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rJMSF039B24+          ATGGCTGCAGGACTTATATCAATTACCATGAAGTGTATTGGAGCATCAATCGGTGAAAAG
                      ____________________________________________________________
consensus             ATGGCTGCAGGACTTATATCAATTACCATGAAGTGTATTGGAGCATCAATCGGTGAAAAG
 
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rJMSF039B24+          CCTCCATTGACCAAAAAGTTGCCTGTGACAATCACGGTTGGCAAGCTGAAGAACCTTTGC
                      ____________________________________________________________
consensus             CCTCCATTGACCAAAAAGTTGCCTGTGACAATCACGGTTGGCAAGCTGAAGAACCTTTGC
 
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rJMSF001E22+                                                 TTTCTTCAGGAAGCGGGCGCC
rJMSF039B24+          GAGAGTTTCTTCAACATAAGATCTATCAAGCCTAAATTATTTCTTCAGGAAGCGGGCGCC
                      ____________________________________________________________
consensus             GAGAGTTTCTTCAACATAAGATCTATCAAGCCTAAATTATTTCTTCAGGAAGCGGGCGCC
 
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rJMSF001E22+          CCATTTCCAACGNTGCTCGAGGATGATATGGCAACTNTGCTGGATGCTGGAGTGGGTAAT
rJMSF049M22+                                                      TGCTGGAGTGGGTAAT
rJMSF039B24+          CCATTTCCAACGCTGCTCGAGGATGATATGGCAACTTTGCTGGATGCTGGAGTGGGTAAT
                      ____________________________________________________________
consensus             CCATTTCCAACGCTGCTCGAGGATGATATGGCAACTTTGCTGGATGCTGGAGTGGGTAAT
 
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rJMSF001E22+          GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAATCCAGAAAAAT
rJMSF049M22+          GAGTCAACCATTCTTGTGGATNAAGAGTAATATNATGCTGTCCTCACAA-CCAGAAAAAT
rJMSF039B24+          GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAA-CCAGAAAAAT
                      ____________________________________________________________
consensus             GAGTCAACCATTCTTGTGGATGAAGAGTAATATAATGCTGTCCTCACAA-CCAGAAAAAT
 
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rJMSF001E22+          CTTAATTTTTTTTTCCTATCGGATA                                   
rJMSF049M22+          CNTAATTTTTTTTTCCTATCGGATATACATTATGATGTGGAACTGGATTTGTGTTTGGAA
rJMSF039B24+          CTTAATTTTTTTTTCCTATCGGATA-ACATTATGATGTGGAACTGGATTTGTGTTTGGAA
                      ____________________________________________________________
consensus             CTTAATTTTTTTTTCCTATCGGATATACATTATGATGTGGAACTGGATTTGTGTTTGGAA
 
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rJMSF049M22+          AATGCAGTTNTGTCGTTCAAGAATTNGACCT                             
rJMSF039B24+          AATGCAGTTTTGTCGTTCAAGAATTTGACCTCATGCATCATACAAGTATGTGGTTGTTGT
                      ____________________________________________________________
consensus             AATGCAGTTTTGTCGTTCAAGAATTTGACCTCATGCATCATACAAGTATGTGGTTGTTGT
 
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rJMSF039B24+          TTGATGAACTTATGCAATTTTATTACACAAATTATATCCATTATGGATATATATATATAT
                      ____________________________________________________________
consensus             TTGATGAACTTATGCAATTTTATTACACAAATTATATCCATTATGGATATATATATATAT