Contig 005769:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005I01Sequence366005769 (3)
JMSF027H01Sequence251016794805005769 (3)gb|KDO44796.1|8e-85hypothetical protein CISIN_1g0077971mg, partial [Citrus sinensis] gb|KDO44797.1|
JMSF038L04Sequence240015816928005769 (3)ref|XP_009602219.1|1e-21PREDICTED: transcription factor PIF4 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027H01+ AAAAAAGAAACTCAGGANGAGA
                      ____________________________________________________________
consensus AAAAAAGAAACTCAGGANGAGA
 
. : . : . : . : . : . :
rJMSF027H01+ AGAATCAGATCCCAGCGCGAAGAAGCTGCTGAGTTTGAATCTGGCAATGGAAACAAGTCA
                      ____________________________________________________________
consensus AGAATCAGATCCCAGCGCGAAGAAGCTGCTGAGTTTGAATCTGGCAATGGAAACAAGTCA
 
. : . : . : . : . : . :
rJMSF027H01+ ACCCAAAAGTCTGGAACCACTCGCAGGAGTCGTGCAGCTGAGGTGCATAACCTCTCTGAA
                      ____________________________________________________________
consensus ACCCAAAAGTCTGGAACCACTCGCAGGAGTCGTGCAGCTGAGGTGCATAACCTCTCTGAA
 
. : . : . : . : . : . :
rJMSF027H01+ AGGAGGCGACGAGATAGAATCAATGAGAAGATGAGGGCCTTGCAAGAGCTTCTCCCTCAC
                      ____________________________________________________________
consensus AGGAGGCGACGAGATAGAATCAATGAGAAGATGAGGGCCTTGCAAGAGCTTCTCCCTCAC
 
. : . : . : . : . : . :
rJMSF027H01+ TCCAATAAGACAGATAAAGCATCAATGCTAGATGAGGCTATTGAATACTTGAAGTCCCTT
                      ____________________________________________________________
consensus TCCAATAAGACAGATAAAGCATCAATGCTAGATGAGGCTATTGAATACTTGAAGTCCCTT
 
. : . : . : . : . : . :
rJMSF027H01+ CAAATGCAACTTCAGATGATGTGGATGGGAAGCGGAATGGCATCAATGATGTTCCCGGGT
                      ____________________________________________________________
consensus CAAATGCAACTTCAGATGATGTGGATGGGAAGCGGAATGGCATCAATGATGTTCCCGGGT
 
. : . : . : . : . : . :
rJMSF027H01+ ATGCAACACTACATGTCACGGATGGGAATGGGAATGGTCCCGCCAGCGCTACCTAATATG
rJMSF038L04+ GGAATGGTCCCGCCAGCGCTACCTAATATG
                      ____________________________________________________________
consensus ATGCAACACTACATGTCACGGATGGGAATGGGAATGGTCCCGCCAGCGCTACCTAATATG
 
. : . : . : . : . : . :
rJMSF027H01+ CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
rJMSF038L04+ CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
                      ____________________________________________________________
consensus CATTTACCGAGGCCTCCTTTGGTTGATCATGCTGCAGCTACTATGGCTTCCACACAGAAC
 
. : . : . : . : . : . :
rJMSF027H01+ CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
rJMSF038L04+ CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
                      ____________________________________________________________
consensus CAAGCAGCATTGTGTCAGAATTCAATGTTGAATCCTATCAACTATCAGAATCAATTGCAA
 
. : . : . : . : . : . :
rJMSF027H01+ AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
rJMSF038L04+ AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
                      ____________________________________________________________
consensus AACCCCAATTTTGCAGAGCAATTTGCTAGTTACATGGGTTTCCACCCTATGCAAAATGCT
 
. : . : . : . : . : . :
rJMSF027H01+ TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
rJMSF038L04+ TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
                      ____________________________________________________________
consensus TCCCAGGCCGTAAACATGTTTAACATGGGCTCACACGCATCTCAACCGAACTCAATGTTC
 
. : . : . : . : . : . :
rJMSF027H01+ AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
rJMSF038L04+ AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
                      ____________________________________________________________
consensus AATCCACCTACCAATGGCAGTGGACCCTCGTCTTGATGAGCATTAGCTACCACAGAGCCA
 
. : . : . : . : . : . :
rJMSF027H01+ GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
rJMSF038L04+ GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
                      ____________________________________________________________
consensus GAGTGGAATACGGGAATGTAAGCTACAGCACTTTGACATCTTAGTTTTTAACAGCATAAT
 
. : . : . : . : . : . :
rJMSF027H01+ AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
rJMSF038L04+ AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
                      ____________________________________________________________
consensus AACAGAAGCAGAAAACTCGTGTGATTTCTGTTCCCTCCAGGAAACAGTAAAACACAAGAA
 
. : . : . : . : . : . :
rJMSF027H01+ TCA
rJMSF038L04+ TCACACAGTATATATCATTATTGATTAACAAGAATGATGTTATTTGTACTTTGAAATTTT
                      ____________________________________________________________
consensus TCACACAGTATATATCATTATTGATTAACAAGAATGATGTTATTTGTACTTTGAAATTTT
 
. : . : . : . : . : . :
rJMSF005I01+ TATGTGGACTGGAACCCTATTATCTCCAN
rJMSF038L04+ TTGAAAAATCGAGATGCAATCAATGGTATTTTATGTGGACTGGAACCCTATTATCTCCAT
                      ____________________________________________________________
consensus TTGAAAAATCGAGATGCAATCAATGGTATTTTATGTGGACTGGAACCCTATTATCTCCAT
 
. : . : . : . : . : . :
rJMSF005I01+ AGGAAATTAAAGCATCTTTGACTATTNTCTGGCATGGTCCCAGATGNTCNTTAAAGACTN
rJMSF038L04+ AGGAAATTAAAGCATCTTTGACTATTTTCTGGCATGGTCCCAGATGCTCATTAAAGACTA
                      ____________________________________________________________
consensus AGGAAATTAAAGCATCTTTGACTATTTTCTGGCATGGTCCCAGATGCTCATTAAAGACTA
 
. : . : . : . : . : . :
rJMSF005I01+ CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
rJMSF038L04+ CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
                      ____________________________________________________________
consensus CCACTGTAGGATAGGGAAAGCCAACTGCTCTCTCAAATGGATGAAAGGAACAGAGTGCAG
 
. : . : . : . : . : . :
rJMSF005I01+ TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCNAGATATGTCATC
rJMSF038L04+ TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCAAGATATGTCATC
                      ____________________________________________________________
consensus TGCCTCCACCATAGGTATGACCTCGAACCAAATTCCATGACACATTCAAGATATGTCATC
 
. : . : . : . : . : . :
rJMSF005I01+ CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTTGNTTAATCTGTCATGT
rJMSF038L04+ CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTT-TTTAATCTGTCATGT
                      ____________________________________________________________
consensus CAGTGCATGTCAATGAAGCAGCTGTTTCACTACACGTTATTCTTGTTTAATCTGTCATGT
 
. : . : . : . : . : . :
rJMSF005I01+ CAAGTGATTAGTGATAGGTTAATTGNTTGNTCGTCCTGTGATTCTGTGAAATATAGTGTT
rJMSF038L04+ CAAGTGATTAGTGATAGGTTAATTGTTTTATCGTCCTGTGATTCTGTGAAATATA-TGTT
                      ____________________________________________________________
consensus CAAGTGATTAGTGATAGGTTAATTGTTTTATCGTCCTGTGATTCTGTGAAATATAGTGTT
 
. : . : . : . : . : . :
rJMSF005I01+ CNTATTACGAGTCNGATCGAGNTATGGTATATAATTC
rJMSF038L04+ CTTATTACGAGTCAGATCGAGTTATTGTATATAATTCTTATTCCTTTTACGGAAAGAAGA
                      ____________________________________________________________
consensus CTTATTACGAGTCAGATCGAGTTATTGTATATAATTCTTATTCCTTTTACGGAAAGAAGA