Contig 005761:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS048H09Sequence610005761 (4)ref|XP_004238065.1|4e-73PREDICTED: transcription factor bHLH74 [Solanum lycopersicum] ref|XP_010320290.1
JMSF037H02Sequence674010711 (3)783005761 (4)ref|XP_006356833.1|2e-30PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|
JMSF045D21Sequence697022234emb|CDP01006.1|1e-24unnamed protein product [Coffea canephora]793005761 (4)ref|XP_006356833.1|1e-58PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|
JMSF053G23Sequence609010711 (3)860005761 (4)ref|XP_006356833.1|4e-30PREDICTED: transcription factor bHLH74-like isoform X1 [Solanum tuberosum] ref|

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF037H02+ GCT
                      ____________________________________________________________
consensus GCT
 
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rJMSF037H02+ ACAGATGCTAATCATATACTCTGTATATCAAGGTTAGACTATTAATTAAATCGAACTATA
                      ____________________________________________________________
consensus ACAGATGCTAATCATATACTCTGTATATCAAGGTTAGACTATTAATTAAATCGAACTATA
 
. : . : . : . : . : . :
rJMSF037H02+ TATCTGCAATATGCAGCATATAATCTGATATTCAAATTGATGACAACCTTTTGGTCTTTC
                      ____________________________________________________________
consensus TATCTGCAATATGCAGCATATAATCTGATATTCAAATTGATGACAACCTTTTGGTCTTTC
 
. : . : . : . : . : . :
rJMSF045D21+ AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
JMFS048H09- AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
rJMSF053G23+ AGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
rJMSF037H02+ GCTCATTTCCAGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
                      ____________________________________________________________
consensus GCTCATTTCCAGTTTCTGTCGATGAAACTTGCTACTGTGAATCCCGAGCTGAACTTTGAT
 
. : . : . : . : . : . :
rJMSF045D21+ ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
JMFS048H09- ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
rJMSF053G23+ ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
rJMSF037H02+ ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
                      ____________________________________________________________
consensus ATCGAACGAATATTATCCAAAGATATTCTTCACGCACAAGGAAACAATGGAGCTCTTCTC
 
. : . : . : . : . : . :
rJMSF045D21+ GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
JMFS048H09- GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
rJMSF053G23+ GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
rJMSF037H02+ GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
                      ____________________________________________________________
consensus GGACTTGGCCCGGGATTGAACTCACCACATCCTTTCCCCGGTGCTCCACTGGGAACATTC
 
. : . : . : . : . : . :
rJMSF045D21+ AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
JMFS048H09- AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
rJMSF053G23+ AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
rJMSF037H02+ AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
                      ____________________________________________________________
consensus AATAATGTCCCCAACGCCACGCCATTTCACTCATTGCCTCAGAATGTGTGGGAGAACGAT
 
. : . : . : . : . : . :
rJMSF045D21+ CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
JMFS048H09- CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
rJMSF053G23+ CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
rJMSF037H02+ CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
                      ____________________________________________________________
consensus CTCCAGAGTATTCTCCAGATGGGATTTGATTCTAACTCTTCTTTGAACAACATGGGACCA
 
. : . : . : . : . : . :
rJMSF045D21+ AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
JMFS048H09- AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
rJMSF053G23+ AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
rJMSF037H02+ AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
                      ____________________________________________________________
consensus AACGGTAATCGTTCATAGGACATATAGCGATATTTGTTGATCTTGTATTCACCCTCGGTT
 
. : . : . : . : . : . :
rJMSF045D21+ CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
JMFS048H09- CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCT
rJMSF053G23+ CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
rJMSF037H02+ CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
                      ____________________________________________________________
consensus CTGGCGTTTTCCCCTCCAAACATAAAGATAGATGTCTCGATCGATCGAGCTGATTAGCAG
 
. : . : . : . : . : . :
rJMSF045D21+ GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
rJMSF053G23+ GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
rJMSF037H02+ GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
                      ____________________________________________________________
consensus GGTGGTGAAGAATGGATTTGTAGATTTCTGGGAATGCTAGCTGCTGTCAACTAATGCCTT
 
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rJMSF045D21+ AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
rJMSF053G23+ AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
rJMSF037H02+ AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
                      ____________________________________________________________
consensus AACTCTTCACTGCTGAATTTGTTTCTTTCCACTGGACAACAAAAAAGTAGCTATACATAA
 
. : . : . : . : . : . :
rJMSF045D21+ TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
rJMSF053G23+ TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
rJMSF037H02+ TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
                      ____________________________________________________________
consensus TTTTCAGAGATGTATAGGTTGTTTAGCTCCTAACTCTTTGTTCTTCGAATTTTAGCAGAA
 
. : . : . : . : . : . :
rJMSF045D21+ GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTT
rJMSF053G23+ GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGC
rJMSF037H02+ GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGCGGATTT
                      ____________________________________________________________
consensus GAAATGGCATTTCATATTTAAAATGGGGTTGTCTGTATGTGTTTAGCTTCATGCGGATTT