Contig 005750:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004A20Sequence282005750 (3)
JMSF035P03Sequence632005037 (6)gb|KHM99576.1|3e-36hypothetical protein glysoja_006419 [Glycine soja]669005750 (3)emb|CBI20385.3|2e-10unnamed protein product [Vitis vinifera]
JMSF049E14Sequence715005037 (6)ref|XP_002528769.1|2e-36conserved hypothetical protein [Ricinus communis] gb|EEF33591.1| conserved hypot690005750 (3)emb|CBI20385.3|2e-10unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049E14+ GCCCCAGGTTCAGAAGCAAGGTATACTGTGTTGGAGGCAAATAA
rJMSF035P03+ AATAA
                      ____________________________________________________________
consensus GCCCCAGGTTCAGAAGCAAGGTATACTGTGTTGGAGGCAAATAA
 
. : . : . : . : . : . :
rJMSF049E14+ GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
rJMSF035P03+ GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
                      ____________________________________________________________
consensus GTAGAAAGAAACCCTGCCAACGCCTGCTAAATGGGGATTACAGTAGCTGCAATGATAAGA
 
. : . : . : . : . : . :
rJMSF049E14+ AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
rJMSF035P03+ AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
                      ____________________________________________________________
consensus AAGAATTGGAGAATAAATACAAGAAATCAGTGCTGCCTAAGGCTGTTGAAGTTGCAAGGG
 
. : . : . : . : . : . :
rJMSF049E14+ AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
rJMSF035P03+ AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
                      ____________________________________________________________
consensus AAATAATGAATACAGATCCAGAAAATAATAATACTAAGCAGCAGCAGCCTCAGGAGTTTT
 
. : . : . : . : . : . :
rJMSF049E14+ GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
rJMSF035P03+ GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
                      ____________________________________________________________
consensus GGAAAGGTCTGAGTGAAGTGTGGGCAGGGTTGCTGGTGTATGCCTCCAGCCATTGTAGAG
 
. : . : . : . : . : . :
rJMSF049E14+ AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
rJMSF035P03+ AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
                      ____________________________________________________________
consensus AAGATGTTTACTACCTCAAAAAAGGTGGACAATTTTATACATTTGTTCGCCTTTTGATGG
 
. : . : . : . : . : . :
rJMSF049E14+ CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
rJMSF035P03+ CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
                      ____________________________________________________________
consensus CTCATTATGGGCTACAAGAAATCCTCGAAGGCGAAAAACATTCATTTCCTGAACTCAGCT
 
. : . : . : . : . : . :
rJMSF049E14+ TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
rJMSF004A20+ CCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
rJMSF035P03+ TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
                      ____________________________________________________________
consensus TCTTCCTGAATGCTAAAATTGGTAAACCAAATTAAAATGGTGTATCTGAAGTGGTTAGTA
 
. : . : . : . : . : . :
rJMSF049E14+ TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
rJMSF004A20+ TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
rJMSF035P03+ TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
                      ____________________________________________________________
consensus TGTAATATAATGAATTAGTACGTAACAAGTCAAAATGTGATGAATTGAAGTGGTTAGTAG
 
. : . : . : . : . : . :
rJMSF049E14+ TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
rJMSF004A20+ TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
rJMSF035P03+ TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
                      ____________________________________________________________
consensus TGGGATTTGAAGTGCATTCATGTGTTAGGTTTATCGATTAATTTCATTTGTGTGCAGTGC
 
. : . : . : . : . : . :
rJMSF049E14+ ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
rJMSF004A20+ ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
rJMSF035P03+ ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
                      ____________________________________________________________
consensus ATGTTTGTTAAAATTAGTGACATTGCATATTGGTCACTATAAATAGTAGATTTCATAGTT
 
. : . : . : . : . : . :
rJMSF049E14+ TTCATTTCATATATGTAAGATAATGC
rJMSF004A20+ TTCATTTCATATATGTAAGATAATGC
rJMSF035P03+ TTCATTTCATATATGTAAGATAATGCATGAGTGTATGAAAGAGTGTGTGTATTAAGAAGT
                      ____________________________________________________________
consensus TTCATTTCATATATGTAAGATAATGCATGAGTGTATGAAAGAGTGTGTGTATTAAGAAGT