| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF026C16 | Sequence | 628 | 005738 (4) | ref|XP_009621362.1| | 3e-55 | PREDICTED: translation initiation factor eIF-2B subunit delta-like isoform X2 [ | |||||
| JMSF009N09 | Sequence | 161 | 000845 (4) | 737 | 005738 (4) | emb|CDP02401.1| | 2e-94 | unnamed protein product [Coffea canephora] | |||
| JMSF033N01 | Sequence | 609 | 000845 (4) | emb|CDP02401.1| | 3e-35 | unnamed protein product [Coffea canephora] | 713 | 005738 (4) | ref|XP_009621362.1| | 7e-59 | PREDICTED: translation initiation factor eIF-2B subunit delta-like isoform X2 [ |
| JMSF037M06 | Sequence | 639 | 000845 (4) | emb|CDP02401.1| | 8e-51 | unnamed protein product [Coffea canephora] | 726 | 005738 (4) | emb|CDP02401.1| | 1e-91 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF009N09+ CGTAGGTTGGTTGCAAAGGGTATTAACTGTA
rJMSF037M06+ TGCAAAGGGTATTAACTGTA
____________________________________________________________
consensus CGTAGGTTGGTTGCAAAGGGTATTAACTGTA
. : . : . : . : . : . :
rJMSF009N09+ CATATACTCATATAAATGCGGTTTCCTACATTATGCATGAAGCTACTCGAGTATTTCTGG
rJMSF037M06+ CATATACTCATATAAATGCGGTTTCCTACATTATGCATGAAGCTACTCGAGTATTTCTGG
____________________________________________________________
consensus CATATACTCATATAAATGCGGTTTCCTACATTATGCATGAAGCTACTCGAGTATTTCTGG
. : . : . : . : . : . :
rJMSF009N09+ GTGCCGCATCAATTTTGTCCAATGGAACTGTTTACTCAAGGGTTGGCACTGCATGTGTTG
rJMSF037M06+ GTGCCGCATCAATTTTGTCCAATGGAACTGTTTACTCAAGGGTTGGCACTGCATGTGTTG
rJMSF033N01+ TTTGTCCAATGGAACTGTTTACTCAAGGGTTGGCACTGCATGTG-TG
____________________________________________________________
consensus GTGCCGCATCAATTTTGTCCAATGGAACTGTTTACTCAAGGGTTGGCACTGCATGTGTTG
. : . : . : . : . : . :
rJMSF009N09+ CTATGGTTGCTCATCAATTCCGTGTTCCTGTCCTGATATGTTGTGAAGCATATAAATTTC
rJMSF037M06+ CTATGGTTGCTCATCAATTCCGTGTTCCTGTCCTGATATGTTGTGAAGCATATAAATTTC
rJMFF026C16+ ATGGTTGCTCATCAATTCCGTGTTCCTGTCCTGATATGTNGTGAAGCATATAAATTTC
rJMSF033N01+ CTATGGTTGCTCATCAATTCCGTGTTCCTGTCCTGATATGTTGTGAAGCATATAAATTTC
____________________________________________________________
consensus CTATGGTTGCTCATCAATTCCGTGTTCCTGTCCTGATATGTTGTGAAGCATATAAATTTC
. : . : . : . : . : . :
rJMSF009N09+ ATGAAAGGGTTCAACTTGACTCAATTTGTTCTAATGAACTTGGTGATCCAGAAGCAATTG
rJMSF037M06+ ATGAAAGGGTTCAACTTGACTCAATTTGTTCTAATGAACTTGGTGATCCAGAAGCAATTG
rJMFF026C16+ ATGAAAGGGTTCAACTTGACTCAATTTGTTCTAATGAACTTGGTGATCCAGAAGCAATTG
rJMSF033N01+ ATGAAAGGGTTCAACTTGACTCAATTTGTTCTAATGAACTTGGTGATCCAGAAGCAATTG
____________________________________________________________
consensus ATGAAAGGGTTCAACTTGACTCAATTTGTTCTAATGAACTTGGTGATCCAGAAGCAATTG
. : . : . : . : . : . :
rJMSF009N09+ CAAATGTTCCTGGTGGTAAGGCAGTCAAACATTTGGATAATTGGTCTAGTAGTGAAAATC
rJMSF037M06+ CAAATGTTCCTGGTGGTAAGGCAGTCAAACATTTGGATAATTGGTCTAGTAGTGAAAATC
rJMFF026C16+ CAAATGTTCCTGGTGGTAAGGCAGTCAAACATTTGGATAATTGGTCTAGTAGTGAAAATC
rJMSF033N01+ CAAATGTTCCTGGTGGTAAGGCAGTCAAACATTTGGATAATTGGTCTAGTAGTGAAAATC
____________________________________________________________
consensus CAAATGTTCCTGGTGGTAAGGCAGTCAAACATTTGGATAATTGGTCTAGTAGTGAAAATC
. : . : . : . : . : . :
rJMSF009N09+ TACAACTTCTGAATCTGATTTATGATGCAACACCAGCGGATTATGTGTCAATGATAATCA
rJMSF037M06+ TACAACTTCTGAATCTGATTTATGATGCAACACCAGCGGATTATGTGTCAATGATAATCA
rJMFF026C16+ TNCAACTTCNGAATNTGATTTATGATGCAACACCAGCGGATTATGTGTCAATGATAATCA
rJMSF033N01+ TACAACTTCTGAATCTGATTTATGATGCAACACCAGCGGATTATGTGTCAATGATAATCA
____________________________________________________________
consensus TACAACTTCTGAATCTGATTTATGATGCAACACCAGCGGATTATGTGTCAATGATAATCA
. : . : . : . : . : . :
rJMSF009N09+ CAGATTATGGAATGATTCCTCCAACAAGTGTTCCTGTCATTGTTCGAGAATACCGCAGAG
rJMSF037M06+ CAGATTATGGAATGATTCCTCCAACAAGTGTTCCTGTCATTGTTCGAGAATACCGCAGAG
rJMFF026C16+ CAGATTATGGAATGATTCCTCCAACAAGTGTTCCTGTCATTGTTCGAGAATACCGCAGAG
rJMSF033N01+ CAGATTATGGAATGATTCCTCCAACAAGTGTTCCTGTCATTGTTCGAGAATACCGCAGAG
____________________________________________________________
consensus CAGATTATGGAATGATTCCTCCAACAAGTGTTCCTGTCATTGTTCGAGAATACCGCAGAG
. : . : . : . : . : . :
rJMSF009N09+ AACACTTGTGGACTTAGAGGGCACCAGGAAATGTCAGAGCTTCAAGGGTTAATACAGGAG
rJMSF037M06+ AACACTTGTGGACTTAGAGGGCACCAGGAAATGTCAGAGCTTCAAGGGTTAATACAGGAG
rJMFF026C16+ AACNCTTGTGGACTTAGAGGGCACCAGGAAATGTCAGAGCTTCAAGGGTTAATACAGGAG
rJMSF033N01+ AACACTTGTGGACTTAGAGGGCACCAGGAAATGTCAGAGCTTCAAGGGTTAATACAGGAG
____________________________________________________________
consensus AACACTTGTGGACTTAGAGGGCACCAGGAAATGTCAGAGCTTCAAGGGTTAATACAGGAG
. : . : . : . : . : . :
rJMSF009N09+ CGATTTTGATCTCAGCCCGGTGTCAATTGCTGTTGGAGTCCCCTATCTTGCTGAGGAAGC
rJMSF037M06+ CGATTTTGATCTCAGCCCGGTGTCAATTGCTGTTGGAGTCCCCTATCTTGCTGAGGAAGC
rJMFF026C16+ CGATTTNGATCTCAGCCCGGTGTCAATTGCTGTTGGAGTCCCCTATCTTGCTGAGGAAGC
rJMSF033N01+ CGATTTTGATCTCAGCCCGGTGTCAATTGCTGTTGGAGTCCCCTATCTTGCTGAGGAAGC
____________________________________________________________
consensus CGATTTTGATCTCAGCCCGGTGTCAATTGCTGTTGGAGTCCCCTATCTTGCTGAGGAAGC
. : . : . : . : . : . :
rJMSF009N09+ AATTTGAGGCATCTGCTGTGAACACTAAAATTTCTTTTGCATCCGTAGTTTAATTCTTGG
rJMSF037M06+ AATTTGAGGCATCTGCTGTGAACACTAAAATTTCTTTTGCATCCGTAGTTTAATTCTTGG
rJMFF026C16+ AATTTGAGGCATCTGCTGTGAACANTAAAATTTCTTTTGCATCCGTAGTTTAATTCTNGG
rJMSF033N01+ AATTTGAGGCATCTGCTGTGAACACTAAAATTTCTTTTGCATCCGTAGTTTAATTCTTGG
____________________________________________________________
consensus AATTTGAGGCATCTGCTGTGAACACTAAAATTTCTTTTGCATCCGTAGTTTAATTCTTGG
. : . : . : . : . : . :
rJMSF009N09+ TTCTCGTGGAATAATAATTTGTCTTGTGATGTACTCGAGATTTTGGATTTCCCATTTTTA
rJMSF037M06+ TTCTCGTGGAATAATAATTTGTCTTGTGATGTACTCGAGATTTTGGATTTCCCATTTTTA
rJMFF026C16+ TTCTCGTGGAATAATAATTTGTCTTGNGATGTACTCGAGATTTTNGATNTCCCANNTTTA
rJMSF033N01+ TTCTCGTGGAATAATAATTTGTCTTGTGATGTACTCGAGATTTTGGATTTCCCATTTTTA
____________________________________________________________
consensus TTCTCGTGGAATAATAATTTGTCTTGTGATGTACTCGAGATTTTGGATTTCCCATTTTTA
. : . : . : . : . : . :
rJMSF009N09+ CATGACCCCGTGAAGAGAGCGATTGGTCCGCCTCTC
rJMSF037M06+ CATGACCCCGTGAAGAGAGCGATTGGTCCGCCTCTC
rJMFF026C16+ CATGACCCCGTGAAGAGAGCGATTGGTCCGCCTCTCAGGGTAGAGTT
rJMSF033N01+ CATGACCCCGTGAAGAGAGCGATTGGTCCGCCTCTCAGGGTAGAGTTTTTGAAACACTTC
____________________________________________________________
consensus CATGACCCCGTGAAGAGAGCGATTGGTCCGCCTCTCAGGGTAGAGTTTTTGAAACACTTC
. : . : . : . : . : . :
rJMSF033N01+ AATTTTCTTAAGAGGCTGTTATTGGAAAACATCAATTTTGTTCTCATTCTTTCTCCCTGC
____________________________________________________________
consensus AATTTTCTTAAGAGGCTGTTATTGGAAAACATCAATTTTGTTCTCATTCTTTCTCCCTGC