clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF008F13 | Sequence | 487 | 006569 (4) | ref|XP_009772913.1| | 2e-78 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 500 | 005715 (5) | ref|XP_006340622.1| | 3e-92 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
JMFF027D01 | Sequence | 519 | 006569 (4) | ref|XP_009772913.1| | 5e-87 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 525 | 005715 (5) | ref|XP_006340622.1| | 1e-99 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
JMSF011D05 | Sequence | 304 | 006569 (4) | ref|XP_007046942.1| | 1e-40 | FAD/NAD(P)-binding oxidoreductase family protein isoform 2, partial [Theobroma | 539 | 005715 (5) | ref|XP_006340622.1| | 1e-100 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
JMSF029I20 | Sequence | 665 | 006569 (4) | ref|XP_009772913.1| | 3e-104 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote | 766 | 005715 (5) | ref|XP_002266788.1| | 2e-156 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
JMSF029K23 | Sequence | 145 | 005715 (5) | ref|XP_009619061.1| | 3e-09 | PREDICTED: pyridine nucleotide-disulfide oxidoreductase domain-containing prote |
This contig is upended
. : . : . : . : . : . :
rJMSF011D05+ TGAGGACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
rJMSF029I20+ ACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
____________________________________________________________
consensus TGAGGACAGCGGTAGAGCTTCTGGGGTGTTGTTGGCTGATGGAACACCAGT
. : . : . : . : . : . :
rJMSF011D05+ GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
rJMSF029I20+ GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
____________________________________________________________
consensus GTATTCTTCAGTTGTCTTGTCAAATGCAACTCCTTACAAGACTTTCATGGATCTTGTACC
. : . : . : . : . : . :
rJMSF011D05+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMFF027D01+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMFF008F13+ TAAAGATGTGCTTCNTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
rJMSF029I20+ TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
____________________________________________________________
consensus TAAAGATGTGCTTCCTGATGATTTCCTTCGTGCAATAAAGTTATCTGATTACAGTTCTGC
. : . : . : . : . : . :
rJMSF011D05+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMFF027D01+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMFF008F13+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
rJMSF029I20+ AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
____________________________________________________________
consensus AACTACCAAAATCAATTTGGCAATTGACAGACTCCCACAGTTCAAGTCCTGCAACTTAAG
. : . : . : . : . : . :
rJMSF011D05+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMFF027D01+ TCATCGTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMSF029K23+ GCCACAACNTACTGGCTCCATTCACATCGNTTNTGAGTGTTNTGA
rJMFF008F13+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
rJMSF029I20+ TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
____________________________________________________________
consensus TCATCCTGATGCTGGGCCACAACATACTGGCTCCATTCACATCGGTTCTGAGTGTTTTGA
. : . : . : . : . : . :
rJMSF011D05+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMFF027D01+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMSF029K23+ GGACATGGTNGCTNNTGCNCAGNATNCTGAAAATGGAGTNCCATCTCGAAGACCNATAAC
rJMFF008F13+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
rJMSF029I20+ GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
____________________________________________________________
consensus GGACATGGCTGCTGCTGCACAGGATGCTGAAAATGGAGTACCATCTCGAAGACCTATAAT
. : . : . : . : . : . :
rJMSF011D05+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMFF027D01+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMSF029K23+ TGAAATGACAATCCNTTCTGTCCCNGATAAGACCATTT
rJMFF008F13+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
rJMSF029I20+ TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
____________________________________________________________
consensus TGAAATGACAATCCCTTCTGTCCTTGATAAGACCATTTCTCCTCCTGGCAAGCATGTTGT
. : . : . : . : . : . :
rJMSF011D05+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMFF027D01+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMFF008F13+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
rJMSF029I20+ TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
____________________________________________________________
consensus TGGTTTGTTTATCCAGTACACACCGTACAAGCCATGTGATGGAAGCTGGGAAGACCCTAC
. : . : . : . : . : . :
rJMSF011D05+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
rJMFF027D01+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
rJMFF008F13+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCNTGGATT
rJMSF029I20+ ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
____________________________________________________________
consensus ATACAGAGAAGCATTTGCTCAGAGATGCTTTAGCCTAATAGATGAATATGCTCCTGGATT
. : . : . : . : . : . :
rJMSF011D05+ CAGCTCAT
rJMFF027D01+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
rJMFF008F13+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
rJMSF029I20+ CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
____________________________________________________________
consensus CAGCTCATCTGTTATTGGTTACGACATGTTGACTCCTCCAGATCTTGAAAGAGTAATTGG
. : . : . : . : . : . :
rJMFF027D01+ TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGAT
rJMFF008F13+ TCTGACAGGGGGGAATATCT
rJMSF029I20+ TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGATTCATTGTTTCTCATGAG
____________________________________________________________
consensus TCTGACAGGGGGGAATATCTTCCACGGTTCCATGGGATTAGATTCATTGTTTCTCATGAG
. : . : . : . : . : . :
rJMSF029I20+ ACCAGTAAAAGGATGGTCAAACTATAGGACTCCACTGCAAGGTTTATATTTGTGCGGTAG
____________________________________________________________
consensus ACCAGTAAAAGGATGGTCAAACTATAGGACTCCACTGCAAGGTTTATATTTGTGCGGTAG
. : . : . : . : . : . :
rJMSF029I20+ TGGGGCACATCCTGGTGGAGGAGTAATGGGAGCCCCAGGGCGCAATGCTGCACGCGTGGT
____________________________________________________________
consensus TGGGGCACATCCTGGTGGAGGAGTAATGGGAGCCCCAGGGCGCAATGCTGCACGCGTGGT