Contig 005707:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS126B02Sequence365005707 (2)
JMSF028H10Sequence638002014 (4)ref|XP_009766676.1|3e-38PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Nicotiana764005707 (2)ref|XP_011071216.1|6e-84PREDICTED: pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 [Sesamum i

Alignment

This contig is upended


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JMFS126B02+                                                                     TA
                      ____________________________________________________________
consensus                                                                       TA
 
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JMFS126B02+           GTACCTTATGTCAGTGATTCATCCACTGTATAATGATTGGTTAAAAATGGCATTTACAAA
                      ____________________________________________________________
consensus             GTACCTTATGTCAGTGATTCATCCACTGTATAATGATTGGTTAAAAATGGCATTTACAAA
 
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JMFS126B02+           AACACACATCTATTACAAATTCAGTTCCCTGAGTTGATTCATAGTTAAAAACTGTACTAA
rJMSF028H10-                           AATTCAGTTCCCTGAGTTGATTCATAGTTAAAAACTGTACTAA
                      ____________________________________________________________
consensus             AACACACATCTATTACAAATTCAGTTCCCTGAGTTGATTCATAGTTAAAAACTGTACTAA
 
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JMFS126B02+           CAGTTGAATACTACCAAGTGTAATGATCCTTCCTTCCTTACACAACTTACAAGCCGTCAA
rJMSF028H10-          CAGTTGAATACTACCAAGTGTAATGATCCTTCCTTCCTTACACAACTTACAAGCCGTCAA
                      ____________________________________________________________
consensus             CAGTTGAATACTACCAAGTGTAATGATCCTTCCTTCCTTACACAACTTACAAGCCGTCAA
 
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JMFS126B02+           TGAATACATGTCAAAAATCATCACATGAAATGTTATACACTTACAGCCCAAGTTTCTTAG
rJMSF028H10-          TGAATACATGTCAAAAATCATCACATGAAATGTTATACACTTACAGCCCAAGTTTCTTAG
                      ____________________________________________________________
consensus             TGAATACATGTCAAAAATCATCACATGAAATGTTATACACTTACAGCCCAAGTTTCTTAG
 
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JMFS126B02+           GTCTAAGGTAAGTAGAAGTCTTGGGCTTCAACCCAGGCATTGAAACTTGTTGTTGCTGCC
rJMSF028H10-          GTCTAAGGTAAGTAGAAGTCTTGGGCTTCAACCCAGGCATTGAAACTTGTTGTTGCTGCC
                      ____________________________________________________________
consensus             GTCTAAGGTAAGTAGAAGTCTTGGGCTTCAACCCAGGCATTGAAACTTGTTGTTGCTGCC
 
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JMFS126B02+           TCTCCCTCTTCTTCCTCTCCTTCTCCTTGTTTCTTCTATCAATCTCTGCTTGCACCTTCC
rJMSF028H10-          TCTCCCTCTTCTTCCTCTCCTTCTCCTTGTTTCTTCTATCAATCTCTGCTTGCACCTTCC
                      ____________________________________________________________
consensus             TCTCCCTCTTCTTCCTCTCCTTCTCCTTGTTTCTTCTATCAATCTCTGCTTGCACCTTCC
 
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JMFS126B02+           TCA                                                         
rJMSF028H10-          TCAAATTCTCCATTTCTTCTTCCATGGCGGTTTTTTCTTCCTTTTGCTTCTTTTTGTGTT
                      ____________________________________________________________
consensus             TCAAATTCTCCATTTCTTCTTCCATGGCGGTTTTTTCTTCCTTTTGCTTCTTTTTGTGTT
 
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rJMSF028H10-          CTAACATGGATGTATCCGACTCCTTGATAGAGAAAAACATGGGTCCCAGCTCCGCTAACC
                      ____________________________________________________________
consensus             CTAACATGGATGTATCCGACTCCTTGATAGAGAAAAACATGGGTCCCAGCTCCGCTAACC
 
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rJMSF028H10-          ACTGAGGCTACTGCGGTCACACACTGCATATACTCCTTCGTTGTTAAGATCAACTCGTGA
                      ____________________________________________________________
consensus             ACTGAGGCTACTGCGGTCACACACTGCATATACTCCTTCGTTGTTAAGATCAACTCGTGA
 
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rJMSF028H10-          TAAACCACGTAATCGGGTGTATAACCCAGCCCATACAGTGCACTAGTGGGATGCAGATGA
                      ____________________________________________________________
consensus             TAAACCACGTAATCGGGTGTATAACCCAGCCCATACAGTGCACTAGTGGGATGCAGATGA
 
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rJMSF028H10-          CATGGCATTCCATTCCTGCAATTCACATATTCACCCACCCCCTTGAGTCTAGCTGAATTA
                      ____________________________________________________________
consensus             CATGGCATTCCATTCCTGCAATTCACATATTCACCCACCCCCTTGAGTCTAGCTGAATTA
 
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rJMSF028H10-          TGAAAATATGCAGAACAGATTGCCTTTCTCACGATGTCCCAATCGGGGCCACATGAGGTA
                      ____________________________________________________________
consensus             TGAAAATATGCAGAACAGATTGCCTTTCTCACGATGTCCCAATCGGGGCCACATGAGGTA
 
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rJMSF028H10-          AGTGGAATTTTGAGGGTCTTCAGTATATCCAGCAGTTGAGATCTAACCTCCCTAGCTTTG
                      ____________________________________________________________
consensus             AGTGGAATTTTGAGGGTCTTCAGTATATCCAGCAGTTGAGATCTAACCTCCCTAGCTTTG
 
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rJMSF028H10-          CGCAAACCTTTGACGTGCAAGAAATGGTCATTACACCAATCACCTCGGTACTGGTTCGCC
                      ____________________________________________________________
consensus             CGCAAACCTTTGACGTGCAAGAAATGGTCATTACACCAATCACCTCGGTACTGGTTCGCC