Contig 005694:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036B08Sequence540005694 (4)ref|XP_004233205.1|6e-84PREDICTED: ras-related protein RABF2a [Solanum lycopersicum]634005694 (4)ref|XP_007024868.1|7e-110RAB isoform 1 [Theobroma cacao] gb|EOY27490.1| RAB isoform 1 [Theobroma cacao]
JMSF025C13Sequence687005694 (4)ref|XP_007024868.1|1e-125RAB isoform 1 [Theobroma cacao] gb|EOY27490.1| RAB isoform 1 [Theobroma cacao]782005694 (4)ref|XP_007024868.1|3e-126RAB isoform 1 [Theobroma cacao] gb|EOY27490.1| RAB isoform 1 [Theobroma cacao]

Alignment

This contig is upended


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rJMSF025C13-                                                                    AT
                      ____________________________________________________________
consensus                                                                       AT
 
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rJMFF036B08-                         GGAGTGGACAAATCACAATGTTTGGTACATAAGAACATGTAATTA
rJMSF025C13-          TAGGATTCCTGTACAGGAGTGGACAAATCACAATGTTTGGTACATAAGAACATGTAATTA
                      ____________________________________________________________
consensus             TAGGATTCCTGTACAGGAGTGGACAAATCACAATGTTTGGTACATAAGAACATGTAATTA
 
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rJMFF036B08-          ACAAAACACAATAAAAAATACAAACCCATGTGTAGTTTCAGGATGACAATAGAAGTTAAG
JMSF025C13+                                               TTCAGGATGACAATAGAAGTTAAG
rJMSF025C13-          ACAAAACACAATAAAAAATACAAACCCATGTGTAGTTTCAGGATGACAATAGAAGTTAAG
                      ____________________________________________________________
consensus             ACAAAACACAATAAAAAATACAAACCCATGTGTAGTTTCAGGATGACAATAGAAGTTAAG
 
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rJMFF036B08-          AGCAGCAAGAAGCAGTAGCAGTTCTTTCAGCTGGTCTATCCATTAGAACCATGCCCGCCG
JMSF025C13+           AGCAGCAAGAAGCAGTAGCAGTTCTTTCAGCTGGTCTATCCATTAGAACCATGCCCGCCG
rJMSF025C13-          AGCAGCAAGAAGCAGTAGCAGTTCTTTCAGCTGGTCTATCCATTAGAACCATGCCCGCCG
                      ____________________________________________________________
consensus             AGCAGCAAGAAGCAGTAGCAGTTCTTTCAGCTGGTCTATCCATTAGAACCATGCCCGCCG
 
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rJMFF036B08-          GATTTGCCGCTGGTTGCATGCGAGGCAGTCGCTTGGCTATTTCATAGAAAATACTATTTA
JMSF025C13+           GATTTGCCGCTGGTTGCATGCGAGGCAGTCGCTTGGCTATTTCATAGAAAATACTATTTA
rJMSF025C13-          GATTTGCCGCTGGTTGCATGCGAGGCAGTCGCTTGGCTATTTCATAGAAAATACTATTTA
                      ____________________________________________________________
consensus             GATTTGCCGCTGGTTGCATGCGAGGCAGTCGCTTGGCTATTTCATAGAAAATACTATTTA
 
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rJMFF036B08-          CATTGGTTGCAGATTTTGCAGAGGTTTCCATAAGGAAAAGGCCATTTTGCTCCGCATATT
JMSF025C13+           CATTGGTTGCAGATTTTGCAGAGGTTTCCATAAGGAAAAGGCCATTTTGCTCTGCATATT
rJMSF025C13-          CATTGGTTGCAGATTTTGCAGAGGTTTCCATAAGGAAAAGGCCATTTTGCTCTGCATATT
                      ____________________________________________________________
consensus             CATTGGTTGCAGATTTTGCAGAGGTTTCCATAAGGAAAAGGCCATTTTGCTCTGCATATT
 
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rJMFF036B08-          TTTGTGCTTCCTCTGTTTCCACCTTCCTTGCATCTACCAAGTCAGATTTATTTCCAGCAA
JMSF025C13+           TTTGTGCTTCCTCTGTTTCCACCTTCCTTGCATCTACCAAGTCAGATTTATTTCCAGCAA
JMFF036B08+                                          ATCTACCAAGTCAGATTTATTTCCAGCAA
rJMSF025C13-          TTTGTGCTTCCTCTGTTTCCACCTTCCTTGCATCTACCAAGTCAGATTTATTTCCAGCAA
                      ____________________________________________________________
consensus             TTTGTGCTTCCTCTGTTTCCACCTTCCTTGCATCTACCAAGTCAGATTTATTTCCAGCAA
 
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rJMFF036B08-          GCGCCATAACCATGTTTGAGTTACCTTGTGCCTGAAGTTCCTGAACCCATTTTTTGGCTC
JMSF025C13+           GCGCCATAACCATGTTTGAGTTACCTTGTGCCTGAAGTTCCTGAACCCATTTTTTGGCTC
JMFF036B08+           GCGCCATAACCATGTTTGAGTTACCTTGTGCCTGAAGTTCCTGAACCCATTTTTTGGCTC
rJMSF025C13-          GCGCCATAACCATGTTTGAGTTACCTTGTGCCTGAAGTTCCTGAACCCATTTTTTGGCTC
                      ____________________________________________________________
consensus             GCGCCATAACCATGTTTGAGTTACCTTGTGCCTGAAGTTCCTGAACCCATTTTTTGGCTC
 
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rJMFF036B08-          TTTGAAAGGATTCTTGATTAGTTATATCATACACGATTATAGCAGCTGCAGCTCCTCTAT
JMSF025C13+           TTTGAAAGGATTCTTGATTAGTTATATCATACACGATTATAGCAGCTGCAGCTCCTCTAT
JMFF036B08+           TTTGAAAGGATTCTTGATTAGTTATATCATACACGATTATAGCAGCTGCAGCTCCTCTAT
rJMSF025C13-          TTTGAAAGGATTCTTGATTAGTTATATCATACACGATTATAGCAGCTGCAGCTCCTCTAT
                      ____________________________________________________________
consensus             TTTGAAAGGATTCTTGATTAGTTATATCATACACGATTATAGCAGCTGCAGCTCCTCTAT
 
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rJMFF036B08-          AGTACATTGGAGCTAAACTATGGTACCTCTCTTGACCTGCTGTGTCCCATATTTCAAATT
JMSF025C13+           AGTACATTGGAGCTAAACTATGGTACCTCTCTTGACCTGCTGTGTCCCATATTTCAAATT
JMFF036B08+           AGTACATTGGAGCTAAACTATGGTACCTCTCTTGACCTGCTGTGTCCCATATTTCAAATT
rJMSF025C13-          AGTACATTGGAGCTAAACTATGGTACCTCTCTTGACCTGCTGTGTCCCATATTTCAAATT
                      ____________________________________________________________
consensus             AGTACATTGGAGCTAAACTATGGTACCTCTCTTGACCTGCTGTGTCCCATATTTCAAATT
 
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rJMFF036B08-          TAACAGTAGCATCATTTACTGCCACTGTTTGAGAGAAAAAGGCAGCTCCAATAGTTGATT
JMSF025C13+           TAACAGTAGCATCATTTACTGCCACTGTTTGAGAGAAAAAGGCAGCTCCAATAGTTGATT
JMFF036B08+           TAACAGTAGCATCATTTACTGCCACTGTTTGAGAGAAAAAGGCAGCTCCAATAGTTGATT
rJMSF025C13-          TAACAGTAGCATCATTTACTGCCACTGTTTGAGAGAAAAAGGCAGCTCCAATAGTTGATT
                      ____________________________________________________________
consensus             TAACAGTAGCATCATTTACTGCCACTGTTTGAGAGAAAAAGGCAGCTCCAATAGTTGATT
 
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rJMFF036B08-          CCTGGAATTCAACAAACTGTCCTTTAACAAAACGCAAAACTAAACTAGA           
JMSF025C13+           CCTGGAATTCAACAAACTGTCCTTTAACAAAACGCAAAACTAAACTAGATTTTCCGGCCC
JMFF036B08+           CCTGGAATTCAACAAACTGTCCTTTAACAAAACGCAAAACTAAACTAGATTTTCCGGCCC
rJMSF025C13-          CCTGGAATTCAACAAACTGTCCTTTAACAAAACGCAAAACTAAACTAGATTTTCCGGCCC
                      ____________________________________________________________
consensus             CCTGGAATTCAACAAACTGTCCTTTAACAAAACGCAAAACTAAACTAGATTTTCCGGCCC
 
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JMSF025C13+           CAACATCTCCTAGGAGCACCAGCTTGGCGTTCATATTTTTGTTTCCG             
JMFF036B08+           CAACATCTCCTAGGAGCACCAGCTTGGCGTTCAT                          
rJMSF025C13-          CAACATCTCCTAGGAGCACCAGCTTGGCGTTCATATTTTTGTTTCCGCTTGTGGCCATGG
                      ____________________________________________________________
consensus             CAACATCTCCTAGGAGCACCAGCTTGGCGTTCATATTTTTGTTTCCGCTTGTGGCCATGG
 
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rJMSF025C13-          CGTTGATCGATTCAATTCCGATGCGAATTCAGTATTTGTGCTTTGGATCAAGAAACAACC
                      ____________________________________________________________
consensus             CGTTGATCGATTCAATTCCGATGCGAATTCAGTATTTGTGCTTTGGATCAAGAAACAACC