Contig 005693:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007D21Sequence355002094 (4)727005693 (3)ref|XP_010088373.1|4e-26Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor
JMSF010E21Sequence294002094 (4)710005693 (3)ref|XP_010088373.1|5e-42Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor
JMSF025A13Sequence651002094 (4)ref|XP_011072480.1|7e-45PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B 703005693 (3)ref|XP_002534125.1|2e-09protein phosphatase pp2a regulatory subunit B, putative [Ricinus communis] gb|E

Alignment

This contig is upended


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rJMSF010E21+                CTGTGCTGCGGGAAGCACTGAAGCAACTACNCTGGAAGCAAGCAAAAATCCTAT
                      ____________________________________________________________
consensus                   CTGTGCTGCGGGAAGCACTGAAGCAACTACNCTGGAAGCAAGCAAAAATCCTAT
 
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rJMSF010E21+          GCGGAGACAAGCCCAGACCCTTTCAAGGCCTGCCAGATCCCTTAGCAGTATAACTCGTGT
rJMSF007D21+                                     GCCTGCCAGATCCCTTAGCAGTATAACTCGTGT
                      ____________________________________________________________
consensus             GCGGAGACAAGCCCAGACCCTTTCAAGGCCTGCCAGATCCCTTAGCAGTATAACTCGTGT
 
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rJMSF010E21+          TGTTAGGAGAGGAGGAGAAAGTCCAGGTGTAGATGCAAATGGAAATACATTTGATTTCNC
rJMSF007D21+          TGTTAGGAGAGGAGGAGAAAGTCCAGGTGTAGATGCAAATGGAAATACATTTGATTTCAC
rJMSF025A13+                          GAAAGTCCAGGTGTAGATGCAAATGGAAATACATTTGATTTCAC
                      ____________________________________________________________
consensus             TGTTAGGAGAGGAGGAGAAAGTCCAGGTGTAGATGCAAATGGAAATACATTTGATTTCAC
 
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rJMSF010E21+          AACAAAATTGCTCCATCTTGCTTGGCACCCATNTGAAAATGCGATTGCTTGTGCTGCTGC
rJMSF007D21+          AACAAAATTGCTCCATCTTGCTTGGCACCCATCTGAAAATGCGATTGCTTGTGCTGCTGC
rJMSF025A13+          AACAAAATTGCTCCATCTTGCTTGGCACCCATCTGAAAATGCGATTGCTTGTGCTGCTGC
                      ____________________________________________________________
consensus             AACAAAATTGCTCCATCTTGCTTGGCACCCATCTGAAAATGCGATTGCTTGTGCTGCTGC
 
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rJMSF010E21+          AAACAGCTTGTACATGTATTATGCATAAATCGATCATACNGGAAGGAAGGGGATGCNTTN
rJMSF007D21+          AAACAGCTTGTACATGTATTATGCATAAATCGATCATACNGGAAGGAAGGGGATGCNTTN
rJMSF025A13+          AAACAGCTTGTACNTGTATTATGCATAAATCGNTCATNCNGGAAGGAAGGGGATGCNTTN
                      ____________________________________________________________
consensus             AAACAGCTTGTACATGTATTATGCATAAATCGATCATACNGGAAGGAAGGGGATGCNTTN
 
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rJMSF010E21+          TGAATTAGCATTTTTTGTGGTTGATTAGAACGCCATCATCGGCTATGGAAGCAACTTGAG
rJMSF007D21+          TGAATTAGCATTTTTTGTGGTTGATTAGAACGCCATCATCGGCTATGGAAGCAACTTGAG
rJMSF025A13+          TGAATTAGCNTTTTTTGTGGTTGATTAGAACGCCNTCATNGGCTATGGAAGCAACNTGAG
                      ____________________________________________________________
consensus             TGAATTAGCATTTTTTGTGGTTGATTAGAACGCCATCATCGGCTATGGAAGCAACTTGAG
 
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rJMSF010E21+          AGGCTNTACCAACTGACTGCTTCTTCATTCATGTGGGGCCCCCCCATAAATTGTAAGTTT
rJMSF007D21+          AGGCTCTACCAACTGACTGCTTCTTCATTCATGTGGGGCCCCCCCATAAATTGTAAGTTT
rJMSF025A13+          NGGCTNTACCAACTGNCTGNTTNTTCNTTCATGTGGGGCCCCCCCNTAAATTGTAAGTTT
                      ____________________________________________________________
consensus             AGGCTCTACCAACTGACTGCTTCTTCATTCATGTGGGGCCCCCCCATAAATTGTAAGTTT
 
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rJMSF010E21+          GAACATCAAGGTTCAGAAGTGGCTGAAGAATCAATGACAAAGAACCTTGCATCGTTCCTT
rJMSF007D21+          GAACATCAAGGTTCAGAAGTGGCTGAAGAATCAATGACAAAGAACCTTGCATCGTTCCTT
rJMSF025A13+          GAACNTCAAGGTTCAGAAGTGGCTGAAGAATCAATGACAAAGAACCCTGCATCGTTCCTT
                      ____________________________________________________________
consensus             GAACATCAAGGTTCAGAAGTGGCTGAAGAATCAATGACAAAGAACCTTGCATCGTTCCTT
 
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rJMSF010E21+          GTCCCNCCCGATTTCTGTTCCACCCTTGTTCAAGGGAAAGTTGCATTTATGTTGTCATTG
rJMSF007D21+          GTCCCNCCCGATTTCTGTTCCNCCCTTGTTCAAGGGAAAGTTGCATTTATGTTGTCATTG
rJMSF025A13+          GTCCCCCCCGATTTNTGTTCCNCCCTTGTTCAAGGGAAAGTTGCNTTTATGTTGTCNTTG
                      ____________________________________________________________
consensus             GTCCCCCCCGATTTCTGTTCCACCCTTGTTCAAGGGAAAGTTGCATTTATGTTGTCATTG
 
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rJMSF010E21+          TGGTGTGGGGAAGTGAGGAAAGGAATGTGAGTTGTGTACATCTTGCTCAGGAGGAGCTGC
rJMSF007D21+          TGGTGTGGGGAAGTGAGGAAAGGAATGTGAGTTGTGTACATCTTGCTCAGGAGGAGCTGC
rJMSF025A13+          TGGTGTGGGGAAGTGAGGAAAGGAATGTGAGTTGTGTACATCTTGCTCNGGNGGAGCTGC
                      ____________________________________________________________
consensus             TGGTGTGGGGAAGTGAGGAAAGGAATGTGAGTTGTGTACATCTTGCTCAGGAGGAGCTGC
 
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rJMSF010E21+          TGCTGCTGCTGCTAACTTTTGCAAGGCGTCAGGGTTGTTTACTTCTTTGGGATAGATTTA
rJMSF007D21+          TGCTGCTGCTGCTAACTTTTGCAAGGCGTCAGGGTTGTTTACTTCTTTGGGATAGATTTA
rJMSF025A13+          TGCTGCTGCTGCTAACTTTTGCAAGGCGTCAGGGTTGTTTACTTCTTTGGGATAGATTTA
                      ____________________________________________________________
consensus             TGCTGCTGCTGCTAACTTTTGCAAGGCGTCAGGGTTGTTTACTTCTTTGGGATAGATTTA
 
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rJMSF010E21+          GCTTTTTGTAGGATAAATTTTAGTGTGGCNTTGTTATAAATTACCAGTTAAAGTAT    
rJMSF007D21+          GCTTTTTGTAGGATAAATTTTAGTGTGGCNTTGTTATAAATTACCNGTTAAAGTATTTTT
rJMSF025A13+          GCTTTTTGTAGGATAAATTTTAGTGNGGCNTTGTTATAAATTACCNGTTAAAGTATTTTT
                      ____________________________________________________________
consensus             GCTTTTTGTAGGATAAATTTTAGTGTGGCNTTGTTATAAATTACCAGTTAAAGTATTTTT
 
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rJMSF007D21+          CTTTTCTATAATTT-AAAAAAAAAAATTCTGCATAAAAGAAAATTTAAAGGGGATCTGAC
rJMSF025A13+          CTTTTCTATAATTTAAAAAAAAAAAATTCTGCATAAAAGAAAATTTAAAGGGGATCTGAC
                      ____________________________________________________________
consensus             CTTTTCTATAATTTAAAAAAAAAAAATTCTGCATAAAAGAAAATTTAAAGGGGATCTGAC
 
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rJMSF007D21+          CTTTAGGTTACCCTGTATTTTACATGGTCATCAGA                         
rJMSF025A13+          CTTTAGGTTA-CCTGTATTTTACATGGTCATCAGACATGAGTAAAGAGATGTTGCTAAAA
                      ____________________________________________________________
consensus             CTTTAGGTTACCCTGTATTTTACATGGTCATCAGACATGAGTAAAGAGATGTTGCTAAAA